cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --read_filter QualCalFilter,table=Sig_18_tissue.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_tissue.table.post --algo ReadWriter Sig_18_tissue.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:161000001, elapsed 0.1s, est remaining 2.0s, peak mem 407MB, user 0.3s, sys 2.4s, output queue size 6
progress 10% @chr2:90000001, elapsed 0.2s, est remaining 1.7s, peak mem 752MB, user 0.4s, sys 4.8s, output queue size 41
progress 15% @chr2:232000001, elapsed 0.3s, est remaining 1.5s, peak mem 985MB, user 0.8s, sys 7.0s, output queue size 4
progress 20% @chr3:152000001, elapsed 0.4s, est remaining 1.4s, peak mem 1175MB, user 1.0s, sys 9.3s, output queue size 17
progress 25% @chr4:113000001, elapsed 0.4s, est remaining 1.3s, peak mem 1312MB, user 1.4s, sys 11.5s, output queue size 13
progress 30% @chr5:85000001, elapsed 0.5s, est remaining 1.2s, peak mem 1534MB, user 1.7s, sys 13.8s, output queue size 15
progress 35% @chr6:62000001, elapsed 0.6s, est remaining 1.1s, peak mem 1691MB, user 1.9s, sys 16.2s, output queue size 4
progress 40% @chr7:55000001, elapsed 0.7s, est remaining 1.0s, peak mem 1823MB, user 2.1s, sys 18.5s, output queue size 2
progress 45% @chr8:55000001, elapsed 0.8s, est remaining 0.9s, peak mem 1961MB, user 2.3s, sys 20.8s, output queue size 4
progress 50% @chr9:72000001, elapsed 0.8s, est remaining 0.8s, peak mem 2069MB, user 2.6s, sys 23.0s, output queue size 11
progress 55% @chr10:95000001, elapsed 0.9s, est remaining 0.8s, peak mem 2162MB, user 2.8s, sys 25.3s, output queue size 3
progress 60% @chr11:122000001, elapsed 1.0s, est remaining 0.7s, peak mem 2225MB, user 3.1s, sys 27.5s, output queue size 9
progress 65% @chr13:11000001, elapsed 1.1s, est remaining 0.6s, peak mem 2255MB, user 3.3s, sys 29.8s, output queue size 4
progress 70% @chr14:58000001, elapsed 1.2s, est remaining 0.5s, peak mem 2309MB, user 3.6s, sys 32.0s, output queue size 5
progress 75% @chr16:26000001, elapsed 1.3s, est remaining 0.4s, peak mem 2363MB, user 3.8s, sys 34.2s, output queue size 4
progress 80% @chr17:80000001, elapsed 1.3s, est remaining 0.3s, peak mem 2372MB, user 4.0s, sys 36.5s, output queue size 4
progress 85% @chr20:18000001, elapsed 1.4s, est remaining 0.2s, peak mem 2413MB, user 4.3s, sys 38.8s, output queue size 4
progress 90% @chrX:45000001, elapsed 1.8s, est remaining 0.2s, peak mem 2810MB, user 8.5s, sys 39.7s, output queue size 114
progress 95% @chrY:47000001, elapsed 1.9s, est remaining 0.1s, peak mem 2819MB, user 9.2s, sys 40.1s, output queue size 276
progress 100% @chr21:41000001, elapsed 5.8s, est remaining 0.0s, peak mem 2848MB, user 29.5s, sys 40.9s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 50047062
output file size: 93248820
reads: 1001838
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.016 real
ReadQualCal::delayed_init: 1 calls 0.003 user 0.001 sys 0.020 real
ReadQualCal::init: 1 calls 0.000 user 0.010 sys 0.006 real
advance: 3219322 calls 1.635 user 5.084 sys 6.585 real
done: 1 calls 0.366 user 0.278 sys 0.647 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.001 user 0.000 sys 5.827 real
fetch: 3219323 calls 0.246 user 4.684 sys 5.133 real
fetch_reads: 3219322 calls 0.230 user 5.195 sys 5.226 real
fetch_ref: 13004 calls 0.038 user 0.015 sys 0.048 real
fetch_vcf: 13004 calls 1.479 user 0.114 sys 1.664 real
idle: 2442 calls 2.040 user 0.186 sys 154.178 real
init: 1 calls 0.003 user 0.001 sys 0.027 real
update: 13229 calls 7.958 user 1.085 sys 9.750 real
write: 3219323 calls 13.356 user 5.228 sys 18.283 real
overall: 2988056576 mem 35.845 user 41.553 sys 7.831 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_tissue.table --after Sig_18_tissue.table.post Sig_18_tissue.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.030 user 0.000 sys 0.026 real
done: 1 calls 0.050 user 0.010 sys 0.058 real
idle: 61 calls 0.002 user 0.000 sys 31.325 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 83648512 mem 0.090 user 0.022 sys 1.061 real