cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_Blood --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_2.tnseq.vcf.gz --contamination negative_somatic_control_2.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_2.tnseq.segments --orientation_priors negative_somatic_control_2.tnseq.orientation_data.tsv negative_somatic_control_2.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:174000001, elapsed 0.1s, est remaining 1.0s, peak mem 418MB, user 0.3s, sys 1.5s, output queue size 101
progress 10% @chr2:87000001, elapsed 0.1s, est remaining 0.8s, peak mem 418MB, user 0.6s, sys 5.4s, output queue size 199
progress 15% @chr3:32000001, elapsed 0.1s, est remaining 0.7s, peak mem 418MB, user 0.9s, sys 10.0s, output queue size 361
progress 20% @chr3:176000001, elapsed 0.2s, est remaining 0.7s, peak mem 418MB, user 1.2s, sys 14.9s, output queue size 523
progress 25% @chr4:44000001, elapsed 0.2s, est remaining 0.6s, peak mem 418MB, user 1.6s, sys 19.9s, output queue size 684
progress 30% @chr5:129000001, elapsed 0.2s, est remaining 0.5s, peak mem 418MB, user 2.0s, sys 24.5s, output queue size 845
progress 35% @chr6:104000001, elapsed 0.3s, est remaining 0.5s, peak mem 418MB, user 2.3s, sys 29.2s, output queue size 1006
progress 40% @chr7:143000001, elapsed 0.3s, est remaining 0.5s, peak mem 418MB, user 2.7s, sys 34.1s, output queue size 1168
progress 45% @chr8:1, elapsed 0.3s, est remaining 0.4s, peak mem 418MB, user 3.0s, sys 38.9s, output queue size 1330
progress 50% @chr9:92000001, elapsed 0.4s, est remaining 0.4s, peak mem 418MB, user 3.4s, sys 42.7s, output queue size 1491
progress 55% @chr11:105000001, elapsed 0.4s, est remaining 0.3s, peak mem 418MB, user 3.7s, sys 43.1s, output queue size 605
progress 60% @chr12:115000001, elapsed 0.4s, est remaining 0.3s, peak mem 418MB, user 4.2s, sys 43.9s, output queue size 766
progress 65% @chr14:45000001, elapsed 0.5s, est remaining 0.3s, peak mem 418MB, user 4.6s, sys 44.7s, output queue size 928
progress 70% @chr15:83000001, elapsed 0.5s, est remaining 0.2s, peak mem 418MB, user 5.1s, sys 45.8s, output queue size 1090
progress 75% @chr18:23000001, elapsed 0.8s, est remaining 0.3s, peak mem 418MB, user 5.2s, sys 46.5s, output queue size 1251
progress 80% @chr20:11000001, elapsed 0.9s, est remaining 0.2s, peak mem 418MB, user 5.3s, sys 46.8s, output queue size 1413
progress 85% @chr22:9000001, elapsed 0.9s, est remaining 0.2s, peak mem 418MB, user 5.7s, sys 47.2s, output queue size 1575
progress 90% @chrY:35000001, elapsed 0.9s, est remaining 0.1s, peak mem 418MB, user 5.9s, sys 47.8s, output queue size 1737
progress 95% @chr6_GL000256v2_alt:1, elapsed 1.0s, est remaining 0.1s, peak mem 418MB, user 6.0s, sys 48.2s, output queue size 2284
progress 100% @HLA-DQA1*06:01:01:1, elapsed 1.3s, est remaining 0.0s, peak mem 418MB, user 6.2s, sys 50.9s, output queue size 5323
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
signature: 000a06d1
features: bfebfbff 7ffefbff
extended: f3bfb7ef fb417ffe
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 51111
output file size: 43431
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.001 user 0.000 sys 0.011 real
"predict_filter": 171 calls 0.000 user 0.002 sys 0.007 real
advance: 3219322 calls 0.683 user 21.071 sys 27.611 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.003 user 0.002 sys 1.412 real
fetch_ref: 460 calls 0.001 user 0.005 sys 0.007 real
idle: 20057 calls 0.442 user 0.103 sys 290.887 real
init: 1 calls 0.232 user 0.084 sys 0.467 real
overall: 439111680 mem 7.776 user 53.308 sys 2.926 real