File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/1783f421ef35dc5e5405df0973b82a/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-667pyskb because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 20:58:15,840 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 20:58:16,624 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 20:58:16,785 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 20:58:17,804 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 20:58:17,974 - cnv_pipe.batch.run_model - INFO - Processing cluster 1573 with 178 probes
2026-06-05 20:58:18,342 - cnv_pipe.batch.run_model.cluster1573 - INFO - Child process started for cluster 1573 with 178 probes
2026-06-05 20:59:12,880 - cnv_pipe.batch.run_model.cluster1573 - INFO - Child process finished cluster 1573. Wrote cluster_1573_samples.csv and cluster_1573_params.csv
2026-06-05 20:59:12,881 - cnv_pipe.batch.run_model - INFO - Cluster 1573 finished in 54.91 seconds. Status: SUCCESS