cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_tissue.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119911554, elapsed 0.0s, est remaining 0.8s, peak mem 173MB, user 0.0s, sys 0.0s, output queue size 5166
progress 10% @chr2:19989992, elapsed 0.1s, est remaining 0.7s, peak mem 173MB, user 0.0s, sys 0.0s, output queue size 7659
progress 15% @chr2:184935783, elapsed 0.1s, est remaining 0.7s, peak mem 182MB, user 0.0s, sys 0.0s, output queue size 3207
progress 20% @chr3:97949844, elapsed 0.2s, est remaining 0.6s, peak mem 191MB, user 0.0s, sys 0.0s, output queue size 13689
progress 25% @chr4:88383221, elapsed 0.2s, est remaining 0.6s, peak mem 191MB, user 0.0s, sys 0.0s, output queue size 23934
progress 30% @chr5:146463551, elapsed 0.2s, est remaining 0.5s, peak mem 210MB, user 0.0s, sys 0.0s, output queue size 9756
progress 35% @chr6:127144950, elapsed 0.3s, est remaining 0.5s, peak mem 210MB, user 0.0s, sys 0.0s, output queue size 19695
progress 40% @chr7:128806688, elapsed 0.3s, est remaining 0.4s, peak mem 219MB, user 0.0s, sys 0.0s, output queue size 29191
progress 45% @chr9:2047229, elapsed 0.3s, est remaining 0.4s, peak mem 347MB, user 0.0s, sys 0.0s, output queue size 38564
progress 50% @chr10:32567670, elapsed 0.4s, est remaining 0.4s, peak mem 402MB, user 0.0s, sys 0.1s, output queue size 6472
progress 55% @chr11:48324941, elapsed 0.4s, est remaining 0.3s, peak mem 438MB, user 0.0s, sys 0.1s, output queue size 16937
progress 60% @chr12:22493223, elapsed 0.4s, est remaining 0.3s, peak mem 441MB, user 0.0s, sys 0.1s, output queue size 26519
progress 65% @chr13:49267490, elapsed 0.4s, est remaining 0.2s, peak mem 465MB, user 0.0s, sys 0.1s, output queue size 37542
progress 70% @chr15:42724491, elapsed 0.5s, est remaining 0.2s, peak mem 492MB, user 0.0s, sys 0.1s, output queue size 47573
progress 75% @chr16:30781718, elapsed 0.5s, est remaining 0.2s, peak mem 492MB, user 0.0s, sys 0.1s, output queue size 57137
progress 80% @chr17:42562612, elapsed 0.5s, est remaining 0.1s, peak mem 503MB, user 0.0s, sys 0.1s, output queue size 67829
progress 85% @chr19:5687753, elapsed 0.6s, est remaining 0.1s, peak mem 503MB, user 0.0s, sys 0.1s, output queue size 78240
progress 90% @chr19:55731999, elapsed 0.6s, est remaining 0.1s, peak mem 513MB, user 0.0s, sys 0.1s, output queue size 87733
progress 95% @chr22:37136228, elapsed 1.0s, est remaining 0.1s, peak mem 2535MB, user 7.8s, sys 1.8s, output queue size 3260
progress 100% @chrY:14733452, elapsed 1.1s, est remaining 0.0s, peak mem 2535MB, user 8.0s, sys 1.8s, output queue size 1798
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 50047062
reads: 1001838
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.864 user 0.115 sys 2.253 real
done: 1 calls 0.313 user 0.078 sys 0.393 real
execute: 1 calls 0.005 user 0.002 sys 1.058 real
fetch_reads: 208647 calls 0.098 user 0.003 sys 0.154 real
fetch_ref: 2079 calls 0.002 user 0.003 sys 0.025 real
fetch_vcf: 2079 calls 0.864 user 0.106 sys 1.027 real
idle: 92 calls 0.003 user 0.001 sys 31.698 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2294 calls 6.432 user 1.533 sys 8.751 real
overall: 2658881536 mem 11.736 user 3.629 sys 2.445 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory