File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/0d16381b97e3de6414e9bcb5f69dbb/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr10_74133927-74134264.bed)
Attempt

Content

View in new tab 
[2026-06-05T20:52:09.289640Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T20:52:09.290855Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T20:52:09.290876Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T20:52:09.290881Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T20:52:09.290885Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXadxaLH'
[2026-06-05T20:52:09.290889Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T20:52:09.290895Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T20:52:09.290899Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T20:52:09.290903Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-05T20:52:09.290907Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T20:52:09.290911Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T20:52:09.290914Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T20:52:09.290918Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T20:52:09.290922Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T20:52:09.291515Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T20:52:09.291651Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T20:52:09.297891Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T20:52:09.298572Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T20:52:09.298815Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T20:52:09.299251Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T20:52:09.299477Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.300209Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.300320Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.300576Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.300850Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.301171Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.301351Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.301681Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.301909Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.302214Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.303508Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.304392Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.304842Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.305172Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T20:52:09.305467Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.305634Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.305790Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.305865Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.305982Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.306046Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.306242Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.306308Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.306730Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.306853Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.306977Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.307040Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.307160Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.307227Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.307371Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.307435Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.307546Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.307632Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.307743Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.308072Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.308286Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.308353Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.308465Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.308527Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.308635Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.308700Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.308811Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.308873Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.308984Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.309047Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.309153Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.309218Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.309328Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.309392Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.309701Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.310198Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.310312Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.310376Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.310484Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.310545Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.310656Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.310715Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.310824Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.310887Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.310994Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.311057Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.311167Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.311282Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.311854Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.311918Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.312023Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.312089Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.312195Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.312256Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.312362Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.312425Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.312532Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.312596Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.312700Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.312763Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.327982Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.328452Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.328528Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.328696Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.328764Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.328855Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.328917Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.329031Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.329188Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.329239Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T20:52:09.330513Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.331159Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.331695Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.332384Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.333583Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.336248Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.336854Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-05T20:52:09.339866Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-05T20:52:09.341888Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.342184Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T20:52:09.342823Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.346501Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-05T20:52:09.347403Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.347666Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T20:52:09.350814Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T20:52:09.353875Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-05T20:52:09.355095Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T20:52:09.464588Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.464653Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.465363Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.465978Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.469653Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T20:52:09.471251Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T20:52:09.580648Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.581480Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.584648Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-05T20:52:09.896808Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.897647Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.900727Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-05T20:52:09.962051Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.962833Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.965524Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T20:52:10.028331Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.029090Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.031772Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-05T20:52:10.394176Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.394924Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.397697Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T20:52:10.459313Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.460095Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.462783Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T20:52:10.525611Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.526442Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.529245Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-05T20:52:10.640895Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.641698Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.644456Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-05T20:52:10.755999Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.756787Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.759735Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-05T20:52:10.788808Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.789516Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.792929Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-05T20:52:10.904216Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.904996Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.907838Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T20:52:10.970117Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.970844Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.973759Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T20:52:10.974883Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.975567Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.978464Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T20:52:11.039769Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.040519Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.044127Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-05T20:52:11.155304Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.156077Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.159013Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-05T20:52:11.220486Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.221268Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.224300Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-05T20:52:11.253397Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.254064Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.256589Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-05T20:52:11.418520Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.419260Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.422295Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-05T20:52:11.423993Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.424652Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.427487Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T20:52:11.457672Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.457754Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.458399Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.460125Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.461204Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T20:52:11.463866Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T20:52:11.492974Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.493682Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.496164Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-05T20:52:11.526897Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.526982Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.527611Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.528466Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.531579Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-05T20:52:11.559399Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-05T20:52:11.561406Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.562049Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.564752Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-05T20:52:11.594072Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.594788Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.597675Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-05T20:52:11.659003Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.659807Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.662507Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-05T20:52:11.723925Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.724652Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.727617Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-05T20:52:11.839143Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.839823Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.843238Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-05T20:52:11.873211Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.873952Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.876750Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-05T20:52:11.938097Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.938791Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.941859Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T20:52:12.003042Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.003162Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.003825Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.005784Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.007658Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-05T20:52:12.008289Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T20:52:12.037891Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.037972Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.038582Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.039151Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.042417Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-05T20:52:12.043634Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-05T20:52:12.055849Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.056405Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.058758Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-05T20:52:12.088475Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.089121Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.091951Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T20:52:12.153386Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.154048Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.156642Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T20:52:12.186211Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.186871Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.189781Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-05T20:52:12.902394Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.903061Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.906036Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-05T20:52:12.967483Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.968106Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.971098Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-05T20:52:13.082595Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.082676Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.083298Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.084052Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.087311Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T20:52:13.088446Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-05T20:52:13.118308Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.118374Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.118406Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.118932Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.119446Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.119936Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.124308Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T20:52:13.124721Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-05T20:52:13.125553Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-05T20:52:13.153532Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.154056Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.157631Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T20:52:13.218391Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.218942Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.221487Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T20:52:13.250944Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.251434Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.253901Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-05T20:52:13.283561Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.284051Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.286646Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-05T20:52:13.316920Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.316991Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.317464Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.318962Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.320617Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-05T20:52:13.321605Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-05T20:52:13.351327Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.351382Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.351802Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.352172Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.354534Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-05T20:52:13.355638Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T20:52:13.566669Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.567176Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.569688Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-05T20:52:13.631354Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.631858Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.634849Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T20:52:13.696223Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.860406Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.860881Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.863734Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-05T20:52:13.924989Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.925063Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.925505Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.927985Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-05T20:52:13.957439Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.965112Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.965498Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.967959Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-05T20:52:13.997411Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.311777Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.312180Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.314878Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-05T20:52:14.343969Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.558381Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.558826Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.561280Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T20:52:14.591867Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.591921Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.592287Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.594862Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-05T20:52:14.624341Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.088900Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.089295Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.092080Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T20:52:15.153371Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.153618Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.153735Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.154304Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.154733Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.156773Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T20:52:15.159298Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T20:52:15.160255Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T20:52:15.188452Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.188514Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.188535Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.188718Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.189226Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.191755Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T20:52:15.192691Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T20:52:15.222551Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.222616Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.222810Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.224776Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T20:52:15.254684Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:19.876496Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T20:52:28.179373Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T20:52:28.179373Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] 
[2026-06-05T20:52:28.179373Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T20:52:28.179433Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] 
[2026-06-05T20:52:28.179445Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T20:52:28.179453Z] [nf-c80d16381b97e3de6414e9bcb5f69dbb-8e3ef-26m92] [596_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec