Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/88572080cac8faab76fdfbecb1c1e0/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/8e9cc6f79df7da2cf7f9cfe9d5c2d6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/8e9cc6f79df7da2cf7f9cfe9d5c2d6/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-15h9eemm because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 20:54:07,098 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 20:54:07,902 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 20:54:08,065 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 20:54:08,996 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 20:54:09,075 - cnv_pipe.batch.run_model - INFO - Processing cluster 131 with 159 probes
2026-06-05 20:54:09,529 - cnv_pipe.batch.run_model.cluster131 - INFO - Child process started for cluster 131 with 159 probes
2026-06-05 20:54:58,668 - cnv_pipe.batch.run_model.cluster131 - INFO - Child process finished cluster 131. Wrote cluster_131_samples.csv and cluster_131_params.csv
2026-06-05 20:54:58,669 - cnv_pipe.batch.run_model - INFO - Cluster 131 finished in 49.59 seconds. Status: SUCCESS