[2026-06-05T20:52:09.248272Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T20:52:09.249446Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T20:52:09.249466Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T20:52:09.249471Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T20:52:09.249476Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXV4zBUK'
[2026-06-05T20:52:09.249480Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T20:52:09.249484Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T20:52:09.249488Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T20:52:09.249491Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-05T20:52:09.249495Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T20:52:09.249499Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T20:52:09.249502Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T20:52:09.249506Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T20:52:09.249510Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T20:52:09.250340Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T20:52:09.250433Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T20:52:09.256270Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T20:52:09.257204Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T20:52:09.257493Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T20:52:09.257690Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.258172Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T20:52:09.258630Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.258940Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.259072Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.259513Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.259938Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.261417Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.261842Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.261964Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.262039Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T20:52:09.262228Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.262300Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.262412Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.262476Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.262586Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.262651Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.262758Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.262821Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.262933Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.263119Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.263688Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.263768Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.263880Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.263946Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.264059Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.264120Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.264230Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.264294Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.264401Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.264465Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.264573Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.264636Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.264757Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.264858Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.265275Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.265340Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.265450Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.265512Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.265619Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.265683Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.265794Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.265854Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.265966Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.266077Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.266186Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.266254Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.266419Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.266916Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.267066Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.267132Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.267239Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.267302Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.267412Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.267473Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.267579Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.267640Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.267748Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.267810Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.267913Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.267976Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.268083Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.268200Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.268734Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.268797Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.268904Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.268968Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.269074Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.269134Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.269666Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.270010Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.270512Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.270607Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.271167Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.271233Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.272612Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.273203Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.273336Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.273405Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.273521Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.273585Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.273702Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.273766Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.273879Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.273942Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.274051Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.274118Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.274237Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.274466Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.275059Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.275122Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.275234Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.275297Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.275404Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.275465Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.275572Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.275634Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.275743Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.275804Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.289687Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.290448Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.290631Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.291445Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.291638Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.291905Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.292007Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.292079Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.292167Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.292354Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.292815Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:52:09.292889Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.293153Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T20:52:09.293658Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.294696Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.297561Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0003] Task initiated on local node
[2026-06-05T20:52:09.297684Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.298169Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.300970Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.301498Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-06-05T20:52:09.301747Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.304122Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0004] Task initiated on local node
[2026-06-05T20:52:09.310510Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0009] Task initiated on local node
[2026-06-05T20:52:09.313215Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-05T20:52:09.315048Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0007] Task initiated on local node
[2026-06-05T20:52:09.315635Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0010] Task initiated on local node
[2026-06-05T20:52:09.318672Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-05T20:52:09.431844Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.432668Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.436677Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0000] Task initiated on local node
[2026-06-05T20:52:09.547380Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.548334Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.551072Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0001] Task initiated on local node
[2026-06-05T20:52:09.713844Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.714875Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.718111Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0008] Task initiated on local node
[2026-06-05T20:52:10.330639Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.331579Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.334644Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0013] Task initiated on local node
[2026-06-05T20:52:10.596744Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.597789Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.600825Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-05T20:52:10.662082Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.663118Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.666423Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T20:52:10.777937Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.778947Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:10.782167Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-06-05T20:52:11.294185Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.294262Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.295237Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.295725Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.299277Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-06-05T20:52:11.300188Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0014] Task initiated on local node
[2026-06-05T20:52:11.329431Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.330399Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.333258Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-05T20:52:11.334106Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.334873Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.337933Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T20:52:11.367069Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.367149Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.368027Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.368499Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.371513Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-05T20:52:11.372534Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-05T20:52:11.400940Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.401946Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.402278Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.403456Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.405945Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-05T20:52:11.406912Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0009] Task initiated on local node
[2026-06-05T20:52:11.436455Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.436512Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.436536Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.437292Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.437761Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.438303Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.441512Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-05T20:52:11.442471Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-05T20:52:11.443655Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-06-05T20:52:11.471665Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.472467Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.474771Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0001] Task initiated on local node
[2026-06-05T20:52:11.504170Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.504976Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.507462Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0007] Task initiated on local node
[2026-06-05T20:52:11.537191Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.537973Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.540328Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-05T20:52:11.570036Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.570829Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.573546Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0004] Task initiated on local node
[2026-06-05T20:52:11.736527Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.737438Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.740314Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T20:52:11.754413Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.755229Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.758013Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0000] Task initiated on local node
[2026-06-05T20:52:11.771179Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.771923Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.774332Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0016] Task initiated on local node
[2026-06-05T20:52:12.337139Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.338043Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.341542Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0006] Task initiated on local node
[2026-06-05T20:52:12.703560Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.704500Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.707468Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0011] Task initiated on local node
[2026-06-05T20:52:12.869119Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.870008Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.872603Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_002_chr3_0000] Task initiated on local node
[2026-06-05T20:52:12.934166Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.935004Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:12.937627Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0000] Task initiated on local node
[2026-06-05T20:52:12.999398Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.000235Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.003561Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-05T20:52:13.064609Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.065463Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.068732Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-05T20:52:13.129644Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.130515Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.133827Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T20:52:13.296091Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.297036Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.299812Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0003] Task initiated on local node
[2026-06-05T20:52:13.313033Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.313987Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.316956Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0006] Task initiated on local node
[2026-06-05T20:52:13.330043Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.330885Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.333382Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0001] Task initiated on local node
[2026-06-05T20:52:13.346974Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.347074Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.347853Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.348349Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.350405Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0004] Task initiated on local node
[2026-06-05T20:52:13.352623Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-05T20:52:13.365737Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.366547Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.369601Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0000] Task initiated on local node
[2026-06-05T20:52:13.382573Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.383394Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.386337Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-05T20:52:13.399423Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.400164Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.402957Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-05T20:52:13.408015Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.408812Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.411263Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-05T20:52:13.417491Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.418327Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.421232Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-05T20:52:13.450350Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.450446Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.451198Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.451907Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.454859Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0003] Task initiated on local node
[2026-06-05T20:52:13.455934Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0014] Task initiated on local node
[2026-06-05T20:52:13.484913Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.485000Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.485712Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.486188Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.489883Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0016] Task initiated on local node
[2026-06-05T20:52:13.490771Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-06-05T20:52:13.492061Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.492779Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.495751Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-05T20:52:13.524723Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.525480Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.528031Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-05T20:52:13.529056Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.529759Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.532098Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T20:52:13.561601Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.562371Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:13.565149Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T20:52:14.127634Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.128449Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.131333Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0001] Task initiated on local node
[2026-06-05T20:52:14.162049Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.162807Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.165275Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-05T20:52:14.194770Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.195552Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.198223Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0013] Task initiated on local node
[2026-06-05T20:52:14.227611Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.228375Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.231476Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0008] Task initiated on local node
[2026-06-05T20:52:14.260406Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.260494Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.261102Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.262645Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.264769Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0004] Task initiated on local node
[2026-06-05T20:52:14.265794Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0010] Task initiated on local node
[2026-06-05T20:52:14.296653Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.296739Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.297379Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.297627Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.300721Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-05T20:52:14.302053Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-06-05T20:52:14.361668Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.361750Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.361776Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.362408Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.362696Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.362870Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.367174Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T20:52:14.368573Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-05T20:52:14.369324Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0002] Task initiated on local node
[2026-06-05T20:52:14.395717Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.396379Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.398585Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0011] Task initiated on local node
[2026-06-05T20:52:14.412294Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.412933Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.415245Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-06-05T20:52:14.420904Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.421526Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.424014Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-05T20:52:14.425296Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.425914Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.428464Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0005] Task initiated on local node
[2026-06-05T20:52:14.458003Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.458619Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.460837Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-05T20:52:14.475382Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.475998Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.478851Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0002] Task initiated on local node
[2026-06-05T20:52:14.492102Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.492710Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.494772Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-05T20:52:14.525494Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.526097Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.528830Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0012] Task initiated on local node
[2026-06-05T20:52:14.640288Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.640359Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.640923Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.641409Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.644576Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T20:52:14.645261Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T20:52:14.675141Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.675689Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.678099Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-05T20:52:14.707605Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.707660Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.708121Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.709551Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.710127Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T20:52:14.712161Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-05T20:52:14.741609Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.742145Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.744339Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-05T20:52:14.774108Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.774619Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.776890Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-05T20:52:14.806609Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.806670Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.807116Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.807633Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.810638Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-05T20:52:14.811641Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0015] Task initiated on local node
[2026-06-05T20:52:14.840814Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.841643Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.844582Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T20:52:14.873699Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.874177Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.876764Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T20:52:14.906447Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.907013Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.909495Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-05T20:52:14.938991Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.939439Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:14.941914Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-05T20:52:14.971467Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.236029Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.236502Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.238898Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0003] Task initiated on local node
[2026-06-05T20:52:15.268441Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.482721Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.483195Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.485510Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0002] Task initiated on local node
[2026-06-05T20:52:15.500041Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.500497Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.503159Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0005] Task initiated on local node
[2026-06-05T20:52:15.516511Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.532280Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.532909Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.533340Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.535906Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0012] Task initiated on local node
[2026-06-05T20:52:15.565160Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.979733Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.980164Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.982912Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0015] Task initiated on local node
[2026-06-05T20:52:15.983840Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.984268Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:15.986749Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0002] Task initiated on local node
[2026-06-05T20:52:16.017298Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:16.017359Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:20.238510Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:20.239019Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:20.241640Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-06-05T20:52:20.303153Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:20.303443Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:20.303570Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:20.304082Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:20.305959Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T20:52:20.306211Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T20:52:20.309073Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T20:52:20.310137Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T20:52:20.340044Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:20.340099Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:20.340122Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:20.340336Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:20.340837Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:20.343260Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T20:52:20.344207Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T20:52:20.375123Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:20.375182Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:20.375377Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:20.377489Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T20:52:20.408191Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:28.228024Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T20:52:42.368883Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T20:52:42.368883Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] 
[2026-06-05T20:52:42.368883Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T20:52:42.368948Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] 
[2026-06-05T20:52:42.368956Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T20:52:42.368963Z] [nf-0bc1e0b6032818732c1233ab6b15da11-ddb70-v49fz] [588_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec