File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/7cbdd092731711e117e016c30774a6/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-_29ezd4v because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 20:57:03,041 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 20:57:03,859 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 20:57:04,026 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 20:57:05,087 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 20:57:05,229 - cnv_pipe.batch.run_model - INFO - Processing cluster 986 with 196 probes
2026-06-05 20:57:05,602 - cnv_pipe.batch.run_model.cluster986 - INFO - Child process started for cluster 986 with 196 probes
2026-06-05 20:58:04,423 - cnv_pipe.batch.run_model.cluster986 - INFO - Child process finished cluster 986. Wrote cluster_986_samples.csv and cluster_986_params.csv
2026-06-05 20:58:04,425 - cnv_pipe.batch.run_model - INFO - Cluster 986 finished in 59.20 seconds. Status: SUCCESS