File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/9fac117d742a1d2fa23afc618fad50/.command.err
Size
86.1 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr4_22420786-22421189.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX3DYSNC/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX3DYSNC/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX3DYSNC/chr4_22420786-22421189.bed.gz.tbi
[2026-06-05T20:51:56.476949Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T20:51:56.477552Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T20:51:56.477563Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T20:51:56.477568Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T20:51:56.477572Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX3DYSNC'
[2026-06-05T20:51:56.477580Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T20:51:56.477586Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T20:51:56.477591Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T20:51:56.477595Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-05T20:51:56.477599Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T20:51:56.477604Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T20:51:56.477608Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T20:51:56.477613Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T20:51:56.477617Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T20:51:56.478385Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T20:51:56.478453Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T20:51:56.484233Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T20:51:56.484863Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T20:51:56.485399Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T20:51:56.485609Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T20:51:56.486236Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.486843Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.486955Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.487041Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.487393Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.487787Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.487904Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.488226Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.488327Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.488875Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.489332Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.489581Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.491500Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.491945Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T20:51:56.492369Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.492538Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.492696Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.492772Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.492897Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.492962Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.493196Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.493362Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.494235Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.494376Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.494513Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.494582Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.494711Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.494782Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.494904Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.495026Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.495146Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.495219Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.495820Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.495889Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.496007Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.496072Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.496183Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.496246Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.496359Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.496425Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.496534Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.496595Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.496712Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.497028Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.497461Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.497529Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.497645Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.497780Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.497910Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.498038Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.498151Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.498226Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.498350Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.498504Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.499175Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.499240Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.499355Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.499419Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.499528Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.499593Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.499704Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.499766Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.499880Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.499943Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.500051Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.500214Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.500715Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.501189Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.501867Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.501935Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.502049Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.502116Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.502224Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.502288Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.504451Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.505115Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.505339Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.505415Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.505536Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.505605Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.505719Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.505782Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.505897Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.505960Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.506069Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.506137Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.506345Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.507092Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.507221Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.507321Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.507441Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.507581Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.507693Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.507756Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.507882Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.507958Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.518843Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.521217Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.522024Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.522859Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.524343Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.525180Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.527526Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.528174Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-05T20:51:56.529081Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.530846Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.533060Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.533705Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.536109Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.540426Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-05T20:51:56.545294Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-05T20:51:56.546901Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.548023Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-05T20:51:56.548339Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-05T20:51:56.548793Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-05T20:51:56.552064Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-05T20:51:56.552487Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.555155Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.555802Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-05T20:51:56.556728Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.556928Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.557016Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.557092Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T20:51:56.822808Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.823824Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.826891Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-05T20:51:57.740592Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.741613Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.744933Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-05T20:51:57.956896Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.958098Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.961636Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-05T20:51:58.023051Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.024146Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.027615Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-05T20:51:58.389107Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.390621Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.394268Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-05T20:51:58.655909Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.657387Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.660477Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-05T20:51:58.721786Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.723284Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.726552Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-05T20:51:58.787457Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.787580Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.789237Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.789675Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.793513Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-05T20:51:58.794877Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-05T20:51:58.854196Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.854281Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.856045Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.856422Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.856974Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.859909Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-05T20:51:58.860749Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.864253Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-05T20:51:58.865468Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-05T20:51:58.893330Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.894662Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.897988Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-05T20:51:58.958756Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.960213Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.963678Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-05T20:51:59.174903Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.176340Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.179880Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-05T20:51:59.390979Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.391069Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.392305Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.392626Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.396141Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-05T20:51:59.397647Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-05T20:51:59.408771Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.409989Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.412957Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-05T20:51:59.474237Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.474323Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.475631Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.475972Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.478921Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-05T20:51:59.480540Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-05T20:51:59.540367Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.540467Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.541759Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.542096Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.545690Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-05T20:51:59.546223Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.547232Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-05T20:51:59.548121Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.551048Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-05T20:51:59.580008Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.580096Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.581300Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.581683Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.584609Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-05T20:51:59.585664Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-05T20:51:59.646156Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.647561Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.650693Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-05T20:52:00.012371Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.013316Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.016666Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-05T20:52:00.017179Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.018025Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.021347Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-05T20:52:00.050558Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.050645Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.051486Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.052082Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.055459Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-05T20:52:00.056654Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-05T20:52:00.116552Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.116632Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.117494Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.117767Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.121475Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-05T20:52:00.152637Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-05T20:52:00.182966Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.183039Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.183853Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.184393Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.187947Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-05T20:52:00.189155Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-05T20:52:00.250309Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.250407Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.251221Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.251788Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.255554Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-05T20:52:00.256376Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-05T20:52:00.466704Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.467620Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.471393Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-05T20:52:00.582583Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.582664Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.583482Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.583971Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.586952Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-05T20:52:00.588501Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-05T20:52:00.648396Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.648468Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.649293Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.649649Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.653549Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-05T20:52:00.654822Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-05T20:52:00.864867Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.865749Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.868853Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-05T20:52:00.898113Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.898903Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.901783Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-05T20:52:01.213899Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.214752Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.217738Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-05T20:52:01.280062Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.280890Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.283755Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-05T20:52:01.345210Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.346035Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.349558Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-05T20:52:01.410235Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.411073Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.414715Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-05T20:52:01.676199Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.676987Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.679826Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-05T20:52:01.741342Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.742157Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.745832Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-05T20:52:01.774524Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.775313Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.778304Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-05T20:52:01.779083Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.779692Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.782568Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-05T20:52:01.894093Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.894855Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.898326Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-05T20:52:01.900153Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.900774Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.903262Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-05T20:52:02.015228Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.016000Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.018878Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-05T20:52:02.130329Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.131062Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.133972Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-05T20:52:02.195259Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.195893Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.198725Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-05T20:52:02.311670Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.312394Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.315451Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-05T20:52:02.344564Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.345229Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.347953Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.348527Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-05T20:52:02.349097Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.352029Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-05T20:52:02.381380Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.382114Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.385096Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-05T20:52:02.446484Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.446558Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.447186Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.447570Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.450794Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-05T20:52:02.480542Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-05T20:52:02.481026Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.481783Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.482410Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.484747Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.485189Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-05T20:52:02.488063Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-05T20:52:02.517355Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.518060Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.520978Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-05T20:52:02.782866Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.783534Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.786696Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-05T20:52:02.948185Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.948823Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.951598Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-05T20:52:02.980940Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.981558Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.984315Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-05T20:52:03.013700Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.014296Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.016736Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-05T20:52:03.046361Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.046968Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.049080Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-05T20:52:03.079735Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.080334Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.083079Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-05T20:52:03.112327Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.112876Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.115425Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-05T20:52:03.128751Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.129299Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.131860Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-05T20:52:03.161244Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.161307Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.161802Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.163691Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.164261Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-05T20:52:03.166927Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-05T20:52:03.180039Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.180578Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.182944Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-05T20:52:03.196460Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.196529Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.197034Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.197407Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.200545Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-05T20:52:03.201505Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-05T20:52:03.213171Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.213718Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.215859Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-05T20:52:03.230553Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.230628Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.231097Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.231608Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.234564Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-05T20:52:03.235440Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-05T20:52:03.248491Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.264332Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.528607Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.529097Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.531514Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-05T20:52:03.561178Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.561246Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.561737Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.563792Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-05T20:52:03.594563Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.909272Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.909332Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.909740Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.910022Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.912715Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-05T20:52:03.914194Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-05T20:52:03.942133Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.942197Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.942825Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.943265Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.945549Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-05T20:52:03.975258Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.389821Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.390210Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.392613Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-05T20:52:04.422272Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.422560Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.422698Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.422931Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.423279Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.427140Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T20:52:04.428746Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T20:52:04.429270Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T20:52:04.456625Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.456678Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.456699Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.456888Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.457374Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.459928Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T20:52:04.461074Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T20:52:04.491624Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.491679Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.491851Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.494256Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T20:52:04.523783Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.092263Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T20:52:15.365989Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T20:52:15.365989Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] 
[2026-06-05T20:52:15.365989Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T20:52:15.366043Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] 
[2026-06-05T20:52:15.366050Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T20:52:15.366057Z] [nf-a49fac117d742a1d2fa23afc618fad50-52249-vx97d] [588_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec