Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/88572080cac8faab76fdfbecb1c1e0/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/c56b0991f07ce9a140d4ca4a29883f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/c56b0991f07ce9a140d4ca4a29883f/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-vw0xabba because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 20:56:39,510 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 20:56:40,387 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 20:56:40,572 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 20:56:41,624 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 20:56:41,767 - cnv_pipe.batch.run_model - INFO - Processing cluster 1037 with 195 probes
2026-06-05 20:56:42,143 - cnv_pipe.batch.run_model.cluster1037 - INFO - Child process started for cluster 1037 with 195 probes
2026-06-05 20:57:41,855 - cnv_pipe.batch.run_model.cluster1037 - INFO - Child process finished cluster 1037. Wrote cluster_1037_samples.csv and cluster_1037_params.csv
2026-06-05 20:57:41,856 - cnv_pipe.batch.run_model - INFO - Cluster 1037 finished in 60.09 seconds. Status: SUCCESS