File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/0f03c89ad4370dfff42afa96edd8db/.command.err
Size
63.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr1_68991-70108.bed)
Attempt

Content

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[2026-06-05T20:51:56.940929Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T20:51:57.005665Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T20:51:57.005690Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T20:51:57.005696Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T20:51:57.005702Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX7TDT70'
[2026-06-05T20:51:57.005707Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T20:51:57.005714Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T20:51:57.005719Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T20:51:57.005724Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-05T20:51:57.005730Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T20:51:57.005735Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T20:51:57.005740Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T20:51:57.005745Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T20:51:57.005751Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T20:51:57.006571Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T20:51:57.006621Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T20:51:57.012403Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T20:51:57.013036Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T20:51:57.013417Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T20:51:57.013652Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T20:51:57.013802Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.014088Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.014488Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.014606Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.014685Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.014815Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.014891Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.015428Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.016773Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.017173Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T20:51:57.017446Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.017889Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.018066Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.018142Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.018261Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.018327Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.018439Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.018506Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.018618Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.018682Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.018927Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.019375Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.019711Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.019878Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.020125Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.020188Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.020305Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.020371Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.020480Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.020545Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.020652Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.020725Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.020832Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.020893Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.021001Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.021063Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.021233Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.021645Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.021783Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.021849Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.021982Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.022065Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.022204Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.022284Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.022827Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.023287Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.023496Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.024007Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.024134Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.024199Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.024310Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.024373Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.024483Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.024544Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.024654Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.024717Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.024828Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.024892Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.025001Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.025139Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.025650Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.025710Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.025821Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.025882Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.025987Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.026055Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.026161Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.026222Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.040063Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.040543Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.040615Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.040774Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.040842Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.040930Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.041975Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.042297Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.043046Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.043097Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T20:51:57.060315Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.060911Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.061204Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.061548Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.062450Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.065411Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-05T20:51:57.066440Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-05T20:51:57.068396Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.068823Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-05T20:51:57.069179Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.071496Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.072235Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-05T20:51:57.072551Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.075553Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-05T20:51:57.079037Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-05T20:51:57.080880Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-05T20:51:57.081616Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T20:51:57.187865Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.188662Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.191947Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-05T20:51:57.804234Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.805060Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.808773Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T20:51:57.869989Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.870806Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.874009Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-05T20:51:58.837011Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.837849Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.840882Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T20:51:58.902428Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.903245Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.906044Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-05T20:51:58.967438Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.967527Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.968263Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.968795Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.971675Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-05T20:51:58.973060Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T20:51:59.034391Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.034470Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.034505Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.034527Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.034546Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.035284Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.037036Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.038647Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.038849Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-05T20:51:59.039246Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.039542Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.040215Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-05T20:51:59.043469Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-05T20:51:59.045646Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-05T20:51:59.046701Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T20:51:59.072396Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.072464Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.073510Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.073870Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.074345Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.076469Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.077518Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-05T20:51:59.079265Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T20:51:59.080356Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-05T20:51:59.109482Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.109553Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.110509Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.110852Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.111511Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.115216Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-05T20:51:59.115974Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.116676Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T20:51:59.119436Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-05T20:51:59.132182Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.132766Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.135763Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T20:51:59.197102Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.197199Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.197863Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.198211Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.201148Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T20:51:59.202126Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T20:51:59.262327Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.262431Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.263076Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.264809Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.266316Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T20:51:59.267331Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-05T20:51:59.329196Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.329279Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.329942Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.331940Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.332752Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-05T20:51:59.335544Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T20:51:59.396805Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.397491Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.400749Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T20:51:59.662236Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.662308Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.662952Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.664820Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.666741Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T20:51:59.667647Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T20:51:59.697441Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.697547Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.698144Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.698671Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.701750Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T20:51:59.702781Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-05T20:52:00.265286Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.265372Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.265961Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.267797Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.269659Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T20:52:00.270655Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-05T20:52:00.299905Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.300502Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.303315Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-05T20:52:00.665544Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.666160Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.669214Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-05T20:52:00.730464Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.731097Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.734080Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-05T20:52:00.795552Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.796270Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.799302Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T20:52:00.812674Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.813221Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.815755Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T20:52:00.822286Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.822827Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.825982Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T20:52:00.855628Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.856215Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.859145Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T20:52:00.872342Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.872920Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.875681Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T20:52:00.905099Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.905667Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.908982Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-05T20:52:00.913919Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.914388Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.917584Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-05T20:52:01.229158Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.229738Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.233404Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-05T20:52:01.294123Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.294719Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.298226Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-05T20:52:01.409592Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.410207Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.413491Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-05T20:52:01.442685Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.443262Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.443879Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.445866Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.446434Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-05T20:52:01.449390Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T20:52:01.478566Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.479095Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.482097Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-05T20:52:01.593316Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.593906Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.597026Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T20:52:01.658475Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.659053Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.662403Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-05T20:52:01.691254Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.691839Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.694427Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T20:52:01.723983Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.724534Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.727573Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-05T20:52:01.788924Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.103525Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.104000Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.107309Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-05T20:52:02.168493Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.483006Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.483469Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.486547Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T20:52:02.515525Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.729713Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.730165Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.732744Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-05T20:52:02.762380Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.976603Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.976674Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.977070Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.979118Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.980951Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T20:52:02.982017Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-05T20:52:03.011151Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.011220Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.225687Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.226099Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.228736Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-05T20:52:03.257870Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.722719Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.723168Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.726142Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-05T20:52:03.755333Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.755607Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.755739Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.756237Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.756730Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.759600Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T20:52:03.761228Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T20:52:03.762254Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T20:52:03.790087Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.790154Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.790184Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.790396Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.790627Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.793419Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T20:52:03.794241Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T20:52:03.822951Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.823017Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.823229Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.825417Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T20:52:03.855213Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.575384Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T20:52:15.894581Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T20:52:15.894581Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] 
[2026-06-05T20:52:15.894581Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T20:52:15.894638Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] 
[2026-06-05T20:52:15.894646Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T20:52:15.894654Z] [nf-e50f03c89ad4370dfff42afa96edd8db-9db66-8h9nl] [583_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec