File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/621fe2a95be7388354d0dd74a1a17d/output/Logs/Info.log
Size
3.3 KB
Attempt
2026-06-05T20:41:52Z thread 428 Sample sheet being processed by common lib? Yes
2026-06-05T20:41:52Z thread 428 SampleSheet Settings: 
2026-06-05T20:41:52Z thread 428   OverrideCycles = Y150;I8;I8;Y150
2026-06-05T20:41:52Z thread 428 
2026-06-05T20:41:52Z thread 428 shared-thread-linux-native-asio output is disabled
2026-06-05T20:41:52Z thread 428 bcl-convert Version 4.4.6
2026-06-05T20:41:52Z thread 428 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-05T20:41:52Z thread 428 Command Line: --tiles s_6 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-05T20:41:52Z thread 428 Conversion Begins.
2026-06-05T20:41:52Z thread 428 Input BCL Information:
2026-06-05T20:41:52Z thread 428     Read Structure: 2026-06-05T20:41:52Z thread 428 Y1502026-06-05T20:41:52Z thread 428 ;2026-06-05T20:41:52Z thread 428 I82026-06-05T20:41:52Z thread 428 ;2026-06-05T20:41:52Z thread 428 I82026-06-05T20:41:52Z thread 428 ;2026-06-05T20:41:52Z thread 428 Y1502026-06-05T20:41:52Z thread 428 
2026-06-05T20:41:52Z thread 428     RunInfo.xml file lists: 8 lanes, 8 tiles
2026-06-05T20:41:52Z thread 428     BCL file format: bcl.gz
2026-06-05T20:41:52Z thread 428     Positions file format: locs
2026-06-05T20:41:52Z thread 428     Filter file format: filter
2026-06-05T20:41:52Z thread 428 Conversion Information:
2026-06-05T20:41:52Z thread 428     Tile filtering: converting 1/8 tiles
2026-06-05T20:41:52Z thread 428     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-05T20:41:52Z thread 428     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-05T20:41:52Z thread 428     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-05T20:41:52Z thread 428     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-05T20:41:52Z thread 428     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-05T20:41:52Z thread 428     Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-05T20:41:52Z thread 428     Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-05T20:41:52Z thread 428     Sample Count: 4
2026-06-05T20:41:52Z thread 428     Expected number of sample FASTQ files to be created: 8
2026-06-05T20:41:52Z thread 428 # CPU hw threads available: 64
2026-06-05T20:41:52Z thread 428 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-05T20:41:52Z thread 428 SW compressors: 64
2026-06-05T20:41:52Z thread 428 SW decompressors: 32
2026-06-05T20:41:52Z thread 428 SW FASTQ compression level: 1
2026-06-05T20:41:52Z thread 428 Lane 6 Post-run Information:
2026-06-05T20:41:52Z thread 428     Total clusters: 250000
2026-06-05T20:41:52Z thread 428     Total Genomic Reads: 500000
2026-06-05T20:41:52Z thread 428     Total Genomic Input Gigabases 0.08
2026-06-05T20:41:52Z thread 428     Minimum reads for a sample: 124832
2026-06-05T20:41:52Z thread 428     Maximum reads for a sample: 125152
2026-06-05T20:41:52Z thread 428     Average reads per sample: 125000.00
2026-06-05T20:41:52Z thread 428     Undetermined reads: 0
2026-06-05T20:41:52Z thread 428 Conversion Complete.