File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/9de09b8eee06eec72c3ee9066ff6bc/.command.log
Size
8.4 KB
Attempt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/300f6c6740654eaca637a17e6203c2/HCC1395_BL_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/e581b918c375e8049b83d4098da2b1/Sig_18_Blood_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/c242640440ac643f310ec017c4c7ac/Sig_18_Blood.sentieon.insert_size_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/ce43686414b714ee13c7a81f104555/HCC1395_tumor.sentieon.insert_size_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/0426a3d8597a8fd5a62f39c0522160/HCC1395_BL.mosdepth.summary.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/14150e1d255fc4e6a2fda25c2d7201/HCC1395_BL_foresight_clarity_targets_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/54caae85aa0890080459dba1630c70/HCC1395_BL_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/3bc8a74d61ffad9ffafdfd8536f988/Sig_18_Blood.stats
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/3670ef51ce1fdb38d7dbe681449387/HCC1395_tumor_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/63c77d4d51a543e708f2ca84c0a83f/HCC1395_BL_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/ccd06f039e27dbb5004ade1bca9f01/Sig_18_tissue_foresight_clarity_targets_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/25de24d15c937b50b2231e07a85dee/HCC1395_tumor_foresight_clarity_targets_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/229909b6448a385e07e28d4e0bfa22/Sig_18_tissue_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/6faf58d3fcdcfc630eb8b579be64f7/HCC1395_tumor.stats
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/417750eebe65ce95a2a7b0d5ad6afa/Sig_18_tissue.mosdepth.summary.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/53de3b48868b11c835234a668b1673/Sig_18_tissue.sentieon.insert_size_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/39b2ecef5d17b966c33cd7fc88de11/Sig_18_tissue_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/4c1ca1ec18c0ea4e6501925e2d7ca4/Sig_18_tissue_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/50767246a6114ef7e2f11271d38095/Sig_18_tissue_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/acbfb85ef41647d065d7e8eeffc1ca/HCC1395_tumor.mosdepth.summary.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/e84888dd6e820b48af907b8a9e3b35/Sig_18_Blood_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/aeabd21472f1bbcdc1aac3a16e0804/Sig_18_Blood.mosdepth.summary.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/2ce64fa961ea538504336294d90165/HCC1395_tumor_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/9de09b8eee06eec72c3ee9066ff6bc/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/327505c0d10751088481509b45953e/Sig_18_Blood_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/ac00e0916438cf08e3f0c43ccb4913/HCC1395_BL_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/60e0a98cf37fcb71347269d81441e1/Sig_18_tissue_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/63af60a99c9d890c8e69b08c9608ad/Sig_18_Blood_foresight_clarity_targets_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/30cdd948475da025e2d07b62d60730/Sig_18_tissue_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/140e0043fc1f691da352ad5d4e6d5b/Sig_18_Blood_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/9de09b8eee06eec72c3ee9066ff6bc/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/4a72a2d5805b0adb4aa6e017f28624/HCC1395_tumor_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/4fe842506267232230fe3a8cbda2f7/HCC1395_BL.stats
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/da15f134dbff9611639b618503fc34/HCC1395_BL.sentieon.insert_size_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/6f29031938ad89016c38db79bc313c/Sig_18_tissue.stats
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/c5887760da68a8453e6997ebabc701/HCC1395_tumor_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/66dcce41da57371e1edbadb92494ee/Sig_18_Blood_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/32bf18750310aed2ced7a6a28a47f9/Sig_18_Blood_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/f7da6d49bf2f26f6ad1472df69b11e/HCC1395_tumor_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/d9d73eacc14c09c0fccfe1a57abeca/Sig_18_Blood_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/c3697365102d33720d02111ddc968a/Sig_18_tissue/Sig_18_tissue_full_basic_stats.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/c681f2e052392efd33d0db0f7c4691/HCC1395_BL_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/f81ed13a7c4221d6a99b4e59e32600/HCC1395_tumor_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/4b5bbb459b8a859b8e13d24fb2240a/HCC1395_BL/HCC1395_BL_full_basic_stats.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/a971d384190366586298aa17bf4509/HCC1395_BL_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/c178fc1ffc63dd5e117158aa8a5472/HCC1395_tumor_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/c6214ca4e0ed5f1e2665f33d9b24a0/HCC1395_BL_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/0aaff3793c6c7306afc2048e517ba5/HCC1395_tumor/HCC1395_tumor_full_basic_stats.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/c470ad858e2b3672c5f260ff05a279/Sig_18_tissue_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/7001a724235ae7dde4424ae2b71f6f/Sig_18_Blood/Sig_18_Blood_full_basic_stats.tsv
==> STAGING COMPLETE (50 inputs)

Post-dedup QC aggregation complete: 4 samples
Tools: samtools, mosdepth, sentieon, seqtool
Output: postdedup_qc.json