File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/bd71e055e9606f578346d1fbd29519/.command.log
Size
828 bytes
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_GERMLINE_VC:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (germline_control_2)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/bd71e055e9606f578346d1fbd29519/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/bd71e055e9606f578346d1fbd29519/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/1123fc5902390e05d0d875bd0ba98e/germline_control_2.haplotyper.split.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/183c0fcbe458c762af8e8a876cbcba/germline_control_2.mpileup.gz
==> STAGING COMPLETE (4 inputs)

Parsing mpileup: germline_control_2.mpileup.gz
Found 26 positions with indel observations
Annotating VCF: germline_control_2.haplotyper.split.vcf.gz
[E::idx_find_and_load] Could not retrieve index file for 'germline_control_2.haplotyper.split.vcf.gz'
Output written to: germline_control_2.entropy.vcf