Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/88572080cac8faab76fdfbecb1c1e0/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/79afb48a89f93dd9f39d976100ad4d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/79afb48a89f93dd9f39d976100ad4d/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-bca7d0pq because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 20:55:09,051 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 20:55:09,890 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 20:55:10,055 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 20:55:11,020 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 20:55:11,215 - cnv_pipe.batch.run_model - INFO - Processing cluster 501 with 181 probes
2026-06-05 20:55:11,600 - cnv_pipe.batch.run_model.cluster501 - INFO - Child process started for cluster 501 with 181 probes
2026-06-05 20:56:06,813 - cnv_pipe.batch.run_model.cluster501 - INFO - Child process finished cluster 501. Wrote cluster_501_samples.csv and cluster_501_params.csv
2026-06-05 20:56:06,814 - cnv_pipe.batch.run_model - INFO - Cluster 501 finished in 55.60 seconds. Status: SUCCESS