cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_tumor --normal_sample reference-NA12878 --max_event_count 5 -v positive_somatic_control_1.tnseq.vcf.gz --contamination positive_somatic_control_1.tnseq.contamination_data.tsv --tumor_segments positive_somatic_control_1.tnseq.segments --orientation_priors positive_somatic_control_1.tnseq.orientation_data.tsv positive_somatic_control_1.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:25000001, elapsed 0.1s, est remaining 1.3s, peak mem 421MB, user 0.1s, sys 0.3s, output queue size 151
progress 10% @chr2:192000001, elapsed 0.1s, est remaining 1.0s, peak mem 421MB, user 0.3s, sys 0.6s, output queue size 312
progress 15% @chr3:96000001, elapsed 0.2s, est remaining 0.9s, peak mem 423MB, user 0.4s, sys 1.0s, output queue size 474
progress 20% @chr4:115000001, elapsed 0.2s, est remaining 0.8s, peak mem 423MB, user 0.6s, sys 1.4s, output queue size 579
progress 25% @chr2:6000001, elapsed 0.2s, est remaining 0.7s, peak mem 423MB, user 0.7s, sys 1.8s, output queue size 741
progress 30% @chr1:242000001, elapsed 0.3s, est remaining 0.6s, peak mem 423MB, user 0.9s, sys 2.3s, output queue size 903
progress 35% @chr7:36000001, elapsed 0.3s, est remaining 0.6s, peak mem 423MB, user 1.1s, sys 3.4s, output queue size 896
progress 40% @chr7:158000001, elapsed 0.3s, est remaining 0.5s, peak mem 423MB, user 1.3s, sys 6.3s, output queue size 1057
progress 45% @chr9:27000001, elapsed 0.4s, est remaining 0.5s, peak mem 423MB, user 1.5s, sys 10.0s, output queue size 1219
progress 50% @chr10:55000001, elapsed 0.4s, est remaining 0.4s, peak mem 423MB, user 1.8s, sys 13.8s, output queue size 1380
progress 55% @chr11:45000001, elapsed 0.5s, est remaining 0.4s, peak mem 423MB, user 2.0s, sys 17.0s, output queue size 1542
progress 60% @chr12:50000001, elapsed 0.5s, est remaining 0.3s, peak mem 423MB, user 2.3s, sys 20.2s, output queue size 1703
progress 65% @chr14:79000001, elapsed 0.5s, est remaining 0.3s, peak mem 424MB, user 2.4s, sys 21.1s, output queue size 1865
progress 70% @chr16:15000001, elapsed 0.6s, est remaining 0.2s, peak mem 424MB, user 2.6s, sys 21.7s, output queue size 2026
progress 75% @chr17:76000001, elapsed 0.6s, est remaining 0.2s, peak mem 424MB, user 2.8s, sys 22.5s, output queue size 2189
progress 80% @chr19:32000001, elapsed 0.7s, est remaining 0.2s, peak mem 424MB, user 3.0s, sys 24.2s, output queue size 2351
progress 85% @chrX:3000001, elapsed 0.7s, est remaining 0.1s, peak mem 424MB, user 3.1s, sys 26.0s, output queue size 2512
progress 90% @chrY:15000001, elapsed 0.7s, est remaining 0.1s, peak mem 424MB, user 3.4s, sys 27.7s, output queue size 2674
progress 95% @chr15_KI270905v1_alt:4000001, elapsed 0.8s, est remaining 0.0s, peak mem 424MB, user 3.7s, sys 29.3s, output queue size 3220
progress 100% @HLA-C*07:04:01:1, elapsed 1.1s, est remaining 0.0s, peak mem 426MB, user 3.9s, sys 31.1s, output queue size 4252
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 50711
output file size: 43806
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.000 user 0.000 sys 0.012 real
"predict_filter": 171 calls 0.001 user 0.001 sys 0.160 real
advance: 3219322 calls 0.634 user 13.352 sys 18.858 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.005 user 0.003 sys 1.278 real
fetch_ref: 448 calls 0.008 user 0.046 sys 1.569 real
idle: 20057 calls 0.511 user 0.209 sys 305.697 real
init: 1 calls 0.271 user 0.073 sys 0.517 real
overall: 446971904 mem 5.264 user 33.417 sys 2.756 real