Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/1c68b115c3db929beceec10d9f3ac7/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/89f7523921bf969ef79e3334a26911/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/1c68b115c3db929beceec10d9f3ac7/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/89f7523921bf969ef79e3334a26911/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-05T20:51:53.110963Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T20:51:53.113347Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T20:51:53.113373Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T20:51:53.113378Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T20:51:53.113383Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX1cSM8A'
[2026-06-05T20:51:53.113386Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T20:51:53.113391Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T20:51:53.113395Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T20:51:53.113398Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] [RunParameters] memMb: 1547923
[2026-06-05T20:51:53.113402Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T20:51:53.113405Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T20:51:53.113409Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T20:51:53.113412Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T20:51:53.113416Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T20:51:53.114182Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T20:51:53.114240Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T20:51:53.119883Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T20:51:53.120500Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T20:51:53.120841Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T20:51:53.121355Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T20:51:53.121515Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.122041Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:51:53.122594Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.122904Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.123088Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.124627Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.125222Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T20:51:53.125313Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.125594Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.125819Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.126095Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.126234Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.126347Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.126408Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.126518Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.126583Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.126690Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.126754Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.126862Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.126923Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.127107Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.127172Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.127347Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.127585Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.127696Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.127756Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.127870Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.127931Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.128039Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.128103Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.128209Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.128299Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.128411Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.128469Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.128578Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.128678Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.129061Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.129129Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.129239Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.129312Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.129599Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.129662Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.129777Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.129837Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.130372Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.130493Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.130697Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.131188Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.131655Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.131719Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.131825Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.131889Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.131994Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.132053Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.132158Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.132218Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.132327Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.132390Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.132498Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.132561Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.132712Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.132808Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.133169Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.133656Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.133980Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.134437Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.135020Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.135080Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.149489Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.149764Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.149836Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.149987Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.150055Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.150137Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.151186Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.151437Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.152387Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.152537Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:53.152685Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T20:51:53.153323Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:53.153825Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:51:53.154386Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-05T20:51:53.154949Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:51:53.155685Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:53.156530Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:53.157482Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:53.158925Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:53.163129Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-05T20:51:53.166275Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-05T20:51:53.168157Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-05T20:51:53.169260Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-05T20:51:53.172601Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T20:51:53.173837Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-05T20:51:53.176223Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T20:51:53.178681Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-05T20:51:54.041900Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.041996Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.042712Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.043317Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.045650Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T20:51:54.048028Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T20:51:54.410004Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.410786Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.413583Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T20:51:54.625399Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.626202Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.629042Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-05T20:51:54.690747Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.691556Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.694449Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-05T20:51:54.856046Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.856146Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.856893Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.857512Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.860199Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-05T20:51:54.895349Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T20:51:54.923620Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.923707Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.924371Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.924792Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.927841Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T20:51:54.928928Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-05T20:51:54.989233Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.989338Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.989374Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.990051Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.991765Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.992373Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.992890Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-05T20:51:54.995722Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-05T20:51:54.996880Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T20:51:55.000871Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.001524Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.003921Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T20:51:55.033674Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.033754Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.034379Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.034984Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.037611Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-05T20:51:55.038620Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T20:51:55.068201Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.068861Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.071386Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-05T20:51:55.100698Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.101368Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.103908Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T20:51:55.165688Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.166400Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.168790Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-05T20:51:55.199408Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.200043Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.202487Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-05T20:51:55.264264Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.264948Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.267491Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-05T20:51:55.529814Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.530486Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.533094Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-05T20:51:55.562525Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.563111Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.565406Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T20:51:55.595945Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.596701Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.597366Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.598089Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.600344Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-05T20:51:55.601363Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T20:51:55.663217Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.663812Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.666463Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T20:51:55.728031Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.728630Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.730797Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T20:51:55.744564Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.745141Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.747432Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T20:51:55.761379Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.761915Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.764461Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-05T20:51:55.777825Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.778364Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.780741Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-05T20:51:55.794337Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.794870Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.797377Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-05T20:51:55.909155Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.909802Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.912499Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-05T20:51:56.124558Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.125239Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.127850Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T20:51:56.189556Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.190203Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.193216Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T20:51:56.255291Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.255896Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.258515Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T20:51:56.320156Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.320771Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.323189Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T20:51:56.337852Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.338411Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.341172Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T20:51:56.354687Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.355252Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.357983Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-05T20:51:56.419488Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.420177Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.423120Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-05T20:51:56.534579Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.535386Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.538279Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-05T20:51:56.599281Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.600050Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.602801Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-05T20:51:57.164928Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.165730Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.169115Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-05T20:51:57.229876Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.230687Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.233797Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T20:51:57.294958Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.295046Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.295720Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.296090Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.299046Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-05T20:51:57.300662Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T20:51:57.360208Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.360293Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.360925Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.361568Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.364873Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T20:51:57.366143Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T20:51:57.395676Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.396282Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.399278Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-05T20:51:57.428371Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.428935Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.431441Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T20:51:57.492989Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.493591Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.496381Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-05T20:51:57.658367Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.658944Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.661670Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-05T20:51:57.723372Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.723927Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.726677Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-05T20:51:57.788405Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.788953Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.791594Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T20:51:57.853324Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.853415Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.853936Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.856728Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-05T20:51:57.886333Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.151316Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.151854Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.154482Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-05T20:51:58.184243Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.248656Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.249199Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.251923Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-05T20:51:58.281477Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.281953Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.284641Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-05T20:51:58.314153Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.314231Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.578810Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.579327Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.582564Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-05T20:51:58.643812Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.908433Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.908986Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.912158Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-05T20:51:58.941204Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.556715Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.557224Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.559764Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-05T20:51:59.589587Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.589893Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.590046Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.590656Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.591294Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.594859Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T20:51:59.596209Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T20:51:59.597060Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T20:51:59.625593Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.625680Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.625706Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.625937Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.626497Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.629273Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T20:51:59.630208Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T20:51:59.660002Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.660088Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.660311Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.662848Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T20:51:59.692381Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.714920Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T20:52:12.002023Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T20:52:12.002023Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] 
[2026-06-05T20:52:12.002023Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T20:52:12.002075Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] 
[2026-06-05T20:52:12.002082Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T20:52:12.002089Z] [nf-ff89f7523921bf969ef79e3334a26911-dcafe-qhwsw] [592_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec