Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/efa07bef4c3e62f368459b5cc1132c/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/278f819846ff96c6923bdd66ccea66/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/278f819846ff96c6923bdd66ccea66/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/efa07bef4c3e62f368459b5cc1132c/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-05T20:51:59.377076Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T20:51:59.378930Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T20:51:59.378961Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T20:51:59.378968Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T20:51:59.378973Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXZxWppD'
[2026-06-05T20:51:59.378977Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T20:51:59.378983Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T20:51:59.378987Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T20:51:59.378991Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] [RunParameters] memMb: 1547923
[2026-06-05T20:51:59.378995Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T20:51:59.378999Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T20:51:59.379002Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T20:51:59.379006Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T20:51:59.379012Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T20:51:59.379866Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T20:51:59.380260Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T20:51:59.386063Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T20:51:59.386560Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T20:51:59.386835Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T20:51:59.387153Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T20:51:59.387396Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.388100Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.388192Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.388264Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.388377Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.388441Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.388751Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.389004Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.389143Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.389400Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.389490Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.389975Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.390387Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.390604Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.392110Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.392743Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.392889Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T20:51:59.393210Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.393596Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.393723Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.393910Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.393975Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.394084Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.394149Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.394257Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.394319Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.394730Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.394918Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.395233Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.395298Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.395406Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.395471Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.395584Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.395644Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.395751Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.395846Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.395951Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.396015Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.396124Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.396190Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.396438Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.396995Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.397183Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.397258Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.397376Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.397441Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.397559Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.397674Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.397902Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.398314Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.398437Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.398504Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.398611Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.398671Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.398787Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.398893Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.399002Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.399066Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.399172Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.399235Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.399369Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.399485Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.399994Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.400059Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.413483Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.414097Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.414164Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.414317Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.414387Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.414470Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.414536Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.414641Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.414705Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:59.414758Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T20:51:59.418429Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.418989Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.419188Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.419426Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.419755Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.420322Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.420863Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.421183Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.422096Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.429083Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-05T20:51:59.430181Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-05T20:51:59.432978Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-05T20:51:59.436273Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-05T20:51:59.438564Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-05T20:51:59.439444Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-05T20:51:59.440933Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-05T20:51:59.442237Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-05T20:51:59.539111Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.539183Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.539816Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.540171Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.543828Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-05T20:51:59.545250Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-05T20:51:59.655282Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.655992Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.658801Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-05T20:51:59.870601Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.871326Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.873949Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-05T20:51:59.903457Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.904114Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.906652Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-05T20:51:59.968434Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.969136Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.971721Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-05T20:52:00.033449Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.034141Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.036479Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-05T20:52:00.098347Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.099035Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.101751Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-05T20:52:00.214703Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.214835Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.215459Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.215997Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.218841Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-05T20:52:00.219499Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-05T20:52:00.250123Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.250196Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.250717Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.251161Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.254119Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-05T20:52:00.255299Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-05T20:52:00.315641Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.316240Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.318588Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-05T20:52:00.430493Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.431097Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.432952Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.433547Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-05T20:52:00.434060Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.436682Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-05T20:52:00.466165Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.466781Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.469196Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-05T20:52:00.581019Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.581703Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.584052Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-05T20:52:00.613782Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.614403Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.616804Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-05T20:52:00.828919Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.829000Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.829030Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.829615Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.830250Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.830557Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.833517Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-05T20:52:00.834813Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-05T20:52:00.835812Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-05T20:52:00.895562Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.895627Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.895658Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.895682Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.896334Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.896632Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.897017Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.897318Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.899796Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-05T20:52:00.902290Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-05T20:52:00.903508Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-05T20:52:00.904705Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-05T20:52:00.929375Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.929875Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.932273Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-05T20:52:00.933493Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.933990Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.936444Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-05T20:52:00.965755Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.965813Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.966311Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.966691Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.969400Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-05T20:52:00.970075Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-05T20:52:00.999154Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.999224Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.999704Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.000177Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.003352Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-05T20:52:01.003931Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T20:52:01.065398Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.065471Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.065492Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.066011Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.066557Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.067070Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.070464Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-05T20:52:01.071625Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-05T20:52:01.072752Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-05T20:52:01.100907Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.101411Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.103898Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-05T20:52:01.104993Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.105472Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.108057Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-05T20:52:01.137411Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.137881Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.140147Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-05T20:52:01.301996Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.302083Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.302563Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.303271Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.306054Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-05T20:52:01.306722Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-05T20:52:01.336405Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.336499Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.336974Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.337308Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.340447Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-05T20:52:01.341218Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-05T20:52:01.341424Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.341881Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.344307Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-05T20:52:01.373878Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.374095Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.374799Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.375373Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.375762Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.378171Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.379261Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-05T20:52:01.380418Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T20:52:01.382454Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-05T20:52:01.395819Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.396337Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.398951Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-05T20:52:01.412293Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.412754Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.415462Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-05T20:52:01.428698Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.428769Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.429181Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.429716Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.433223Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T20:52:01.433778Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-05T20:52:01.447816Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.463724Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.527756Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.528256Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.531131Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-05T20:52:01.592576Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.957406Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.957892Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.960808Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-05T20:52:02.022275Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.022376Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.022802Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.025518Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-05T20:52:02.087073Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.251483Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.251974Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.254889Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-05T20:52:02.316379Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.324147Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.324560Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.327298Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-05T20:52:02.356823Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.621338Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.621808Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.624533Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-05T20:52:02.653898Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.654148Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.654298Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.654519Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.654786Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.659462Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T20:52:02.659880Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T20:52:02.660445Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T20:52:02.688235Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.688306Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.688330Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.688535Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.689344Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.691791Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T20:52:02.692463Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T20:52:02.723081Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.723152Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.723342Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.725917Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T20:52:02.755408Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.023600Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T20:52:09.945038Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T20:52:09.945038Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] 
[2026-06-05T20:52:09.945038Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T20:52:09.945095Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] 
[2026-06-05T20:52:09.945103Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T20:52:09.945108Z] [nf-43efa07bef4c3e62f368459b5cc1132c-5cbfb-frp7w] [597_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec