File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/31ea4683caf8a75320c2d68fce879e/.command.log
Size
61.6 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr9_110971973-110972217.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/1c68b115c3db929beceec10d9f3ac7/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/31ea4683caf8a75320c2d68fce879e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/1c68b115c3db929beceec10d9f3ac7/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/31ea4683caf8a75320c2d68fce879e/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-05T20:51:56.194484Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T20:51:56.196073Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T20:51:56.196092Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T20:51:56.196097Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T20:51:56.196102Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXBT6Mnc'
[2026-06-05T20:51:56.196106Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T20:51:56.196110Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T20:51:56.196114Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T20:51:56.196117Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-05T20:51:56.196121Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T20:51:56.196124Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T20:51:56.196128Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T20:51:56.196132Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T20:51:56.196136Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T20:51:56.196960Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T20:51:56.197108Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T20:51:56.203200Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T20:51:56.203996Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T20:51:56.204117Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T20:51:56.204330Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T20:51:56.204543Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.205335Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.205691Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.205849Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.205936Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.206078Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.206156Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.206534Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.206669Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.206793Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.206865Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.207005Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.207202Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.207378Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.209708Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.209875Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T20:51:56.210310Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.210419Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.210548Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.210617Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.210806Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.210880Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.211004Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.211087Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.211433Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.211632Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.212051Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.212118Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.212230Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.212296Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.212406Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.212520Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.212975Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.213144Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.213570Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.213643Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.213761Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.213836Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.213956Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.214055Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.214188Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.214257Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.214385Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.214457Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.214590Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.214771Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.215219Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.215287Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.215470Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.215537Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.215656Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.215722Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.215840Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.215918Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.216031Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.216092Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.216471Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.216810Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.216929Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.217010Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.217123Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.217187Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.217334Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.217402Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.231296Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.231460Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.231525Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.231689Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.231759Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.231842Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.231912Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.232026Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.232100Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.232145Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T20:51:56.236273Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.236819Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.238264Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.238651Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.239015Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.239645Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.239949Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.240310Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.241082Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.246967Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-05T20:51:56.250309Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-05T20:51:56.252300Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-05T20:51:56.253412Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-05T20:51:56.256613Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-05T20:51:56.258313Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-05T20:51:56.260185Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-05T20:51:56.260849Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-05T20:51:56.357903Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.357977Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.358631Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.359305Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.363152Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-05T20:51:56.364338Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-05T20:51:56.475922Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.476647Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.479596Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-05T20:51:56.508674Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.509376Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.512102Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-05T20:51:56.974717Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.975555Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.978934Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-05T20:51:57.140683Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.141485Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.144675Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-05T20:51:57.157620Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.158357Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.161361Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-05T20:51:57.174460Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.175604Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.176272Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.177013Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.179932Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-05T20:51:57.181514Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-05T20:51:57.242948Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.243691Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.247173Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-05T20:51:57.358140Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.358896Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.361783Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-05T20:51:57.392119Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.392868Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.394971Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.395815Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.396150Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-05T20:51:57.398413Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-05T20:51:57.427876Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.428479Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.431375Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-05T20:51:57.793548Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.794277Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.797462Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-05T20:51:57.826679Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.827383Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.830361Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-05T20:51:57.859711Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.859790Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.860401Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.860959Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.864123Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-05T20:51:57.865463Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-05T20:51:57.896267Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.896373Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.896982Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.897498Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.900849Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-05T20:51:57.901669Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-05T20:51:57.962337Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.963111Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.966331Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-05T20:51:58.027919Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.028605Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.031926Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-05T20:51:58.093058Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.093748Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.096671Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-05T20:51:58.157811Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.158488Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.161721Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-05T20:51:58.190646Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.191296Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.194957Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-05T20:51:58.223820Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.224560Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.228018Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-05T20:51:58.289233Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.289930Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.293614Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-05T20:51:58.354654Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.355318Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.358262Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-05T20:51:58.419880Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.420532Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.423801Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-05T20:51:58.436652Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.437474Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.439549Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.440167Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.440626Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-05T20:51:58.443762Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-05T20:51:58.604990Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.605622Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.608793Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-05T20:51:58.638844Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.639420Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.642603Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-05T20:51:58.671679Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.672291Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.675844Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-05T20:51:58.736510Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.737156Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.740274Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-05T20:51:58.801429Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.801514Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.802091Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.802600Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.806279Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-05T20:51:58.807435Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-05T20:51:58.867175Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.867265Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.867301Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.867846Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.868426Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.869127Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.873319Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-05T20:51:58.874969Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T20:51:58.876205Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-05T20:51:58.904200Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.904829Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.907657Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-05T20:51:58.936901Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.936985Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.937515Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.938028Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.942567Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-05T20:51:58.943625Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-05T20:51:58.971738Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.972300Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.975060Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T20:51:59.005510Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.006077Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.008792Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-05T20:51:59.022138Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.022744Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.025342Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T20:51:59.038746Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.039274Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.041946Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-05T20:51:59.071644Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.072218Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.075011Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-05T20:51:59.104441Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.105311Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.106045Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.108409Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.108922Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-05T20:51:59.109118Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.112121Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-05T20:51:59.112987Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.113452Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.115855Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-05T20:51:59.177344Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.177434Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.177469Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.177493Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.177964Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.181051Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-05T20:51:59.211385Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.626496Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.626572Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.626988Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.627467Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.631064Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-05T20:51:59.632083Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-05T20:51:59.694584Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.694667Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.859036Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.859477Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.862221Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-05T20:51:59.923748Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.924041Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.924202Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.924733Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.927080Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.927387Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T20:51:59.930329Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T20:51:59.931505Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T20:51:59.961292Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.961367Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.961392Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.961625Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.962195Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.965453Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T20:51:59.966667Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T20:51:59.996355Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.999750Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.999955Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.003043Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T20:52:00.064563Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.882064Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T20:52:06.755529Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T20:52:06.755529Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] 
[2026-06-05T20:52:06.755529Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T20:52:06.755570Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] 
[2026-06-05T20:52:06.755577Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T20:52:06.755584Z] [nf-7431ea4683caf8a75320c2d68fce879e-40ef5-pqcjq] [575_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec