File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/fbebc9e04ed4144d1f4a691fe5f18f/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-848_9zie because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 20:57:50,548 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 20:57:51,438 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 20:57:51,609 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 20:57:52,668 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 20:57:52,832 - cnv_pipe.batch.run_model - INFO - Processing cluster 1463 with 141 probes
2026-06-05 20:57:53,227 - cnv_pipe.batch.run_model.cluster1463 - INFO - Child process started for cluster 1463 with 141 probes
2026-06-05 20:58:38,025 - cnv_pipe.batch.run_model.cluster1463 - INFO - Child process finished cluster 1463. Wrote cluster_1463_samples.csv and cluster_1463_params.csv
2026-06-05 20:58:38,025 - cnv_pipe.batch.run_model - INFO - Cluster 1463 finished in 45.19 seconds. Status: SUCCESS