cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr1_69091-70008.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr1_69091-70008.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:18634302, elapsed 0.1s, est remaining 1.1s, peak mem 81MB, user 0.1s, sys 0.1s, output queue size 2159
progress 10% @chr1:37794183, elapsed 0.1s, est remaining 1.1s, peak mem 94MB, user 0.1s, sys 0.3s, output queue size 921
progress 15% @chr1:65411250, elapsed 0.2s, est remaining 1.1s, peak mem 102MB, user 0.1s, sys 0.4s, output queue size 3646
progress 20% @chr1:113837590, elapsed 0.3s, est remaining 1.0s, peak mem 115MB, user 0.2s, sys 0.5s, output queue size 6407
progress 25% @chr1:155248405, elapsed 0.3s, est remaining 0.9s, peak mem 120MB, user 0.2s, sys 0.7s, output queue size 8749
progress 30% @chr1:179102287, elapsed 0.4s, est remaining 0.8s, peak mem 133MB, user 0.2s, sys 0.8s, output queue size 11222
progress 35% @chr1:209801240, elapsed 0.4s, est remaining 0.8s, peak mem 141MB, user 0.3s, sys 0.9s, output queue size 13653
progress 40% @chr1:247037449, elapsed 0.5s, est remaining 0.7s, peak mem 150MB, user 0.3s, sys 1.0s, output queue size 16063
progress 45% @chr2:32593915, elapsed 0.5s, est remaining 0.7s, peak mem 160MB, user 0.3s, sys 1.1s, output queue size 18348
progress 50% @chr2:74461275, elapsed 0.6s, est remaining 0.6s, peak mem 169MB, user 0.4s, sys 1.2s, output queue size 20835
progress 55% @chr2:113719154, elapsed 0.7s, est remaining 0.5s, peak mem 178MB, user 0.4s, sys 1.3s, output queue size 23377
progress 60% @chr2:171006474, elapsed 0.7s, est remaining 0.5s, peak mem 189MB, user 0.5s, sys 1.4s, output queue size 26066
progress 65% @chr2:202765446, elapsed 0.8s, est remaining 0.4s, peak mem 199MB, user 0.5s, sys 1.5s, output queue size 28333
progress 70% @chr2:233772261, elapsed 0.8s, est remaining 0.3s, peak mem 210MB, user 0.5s, sys 1.7s, output queue size 30812
progress 75% @chr3:25623515, elapsed 0.9s, est remaining 0.3s, peak mem 214MB, user 0.5s, sys 1.8s, output queue size 33036
progress 80% @chr3:49808976, elapsed 0.9s, est remaining 0.2s, peak mem 225MB, user 0.6s, sys 1.9s, output queue size 35514
progress 85% @chr3:101859272, elapsed 1.0s, est remaining 0.2s, peak mem 235MB, user 0.6s, sys 2.0s, output queue size 38147
progress 90% @chr3:139582927, elapsed 1.0s, est remaining 0.1s, peak mem 246MB, user 0.6s, sys 2.2s, output queue size 226
progress 95% @chr3:187741772, elapsed 1.1s, est remaining 0.1s, peak mem 258MB, user 0.6s, sys 2.3s, output queue size 2641
progress 100% @chr4:8282437, elapsed 1.1s, est remaining 0.0s, peak mem 270MB, user 0.6s, sys 2.5s, output queue size 4871
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74586805
output file size: 22307
reads: 1001133
contig: 49651 intervals 9000373 bases
active: 100735 calls 0.000 user 0.006 sys 0.015 real
advance: 51084 calls 0.000 user 0.006 sys 0.020 real
calc: 100735 calls 0.000 user 0.000 sys 0.016 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.004 user 0.001 sys 2.120 real
fetch: 100735 calls 0.002 user 0.012 sys 0.016 real
fetch_ref: 100735 calls 0.033 user 0.042 sys 0.336 real
idle: 51 calls 0.002 user 0.036 sys 24.651 real
init: 1 calls 0.019 user 0.021 sys 0.042 real
region: 100735 calls 0.001 user 0.002 sys 0.017 real
tracker: 100735 calls 0.014 user 0.009 sys 0.087 real
overall: 283426816 mem 0.977 user 3.735 sys 3.243 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory