File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/34dee86b8c55838bfe380a9d98e215/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-2mfb253n because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 20:58:02,442 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 20:58:03,775 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 20:58:04,057 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 20:58:05,790 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 20:58:06,033 - cnv_pipe.batch.run_model - INFO - Processing cluster 1508 with 200 probes
2026-06-05 20:58:06,660 - cnv_pipe.batch.run_model.cluster1508 - INFO - Child process started for cluster 1508 with 200 probes
2026-06-05 20:59:43,260 - cnv_pipe.batch.run_model.cluster1508 - INFO - Child process finished cluster 1508. Wrote cluster_1508_samples.csv and cluster_1508_params.csv
2026-06-05 20:59:43,262 - cnv_pipe.batch.run_model - INFO - Cluster 1508 finished in 97.23 seconds. Status: SUCCESS