Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/1c68b115c3db929beceec10d9f3ac7/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/019e2c65c95f103ac06c30858a6c66/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/1c68b115c3db929beceec10d9f3ac7/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/019e2c65c95f103ac06c30858a6c66/.command.run
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXh16uSw/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXh16uSw/chr4_22420786-22421189.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXh16uSw/chr4_22420786-22421189.bed.gz.tbi
[2026-06-05T20:51:53.404547Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T20:51:53.405369Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T20:51:53.405389Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T20:51:53.405394Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T20:51:53.405399Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXh16uSw'
[2026-06-05T20:51:53.405403Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T20:51:53.405408Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T20:51:53.405411Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T20:51:53.405415Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-05T20:51:53.405419Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T20:51:53.405422Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T20:51:53.405426Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T20:51:53.405430Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T20:51:53.405434Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T20:51:53.405902Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T20:51:53.406060Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T20:51:53.412435Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T20:51:53.413189Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T20:51:53.413481Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T20:51:53.414012Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T20:51:53.414607Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.415119Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.415219Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.415291Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.415412Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.415479Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.415662Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.415874Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:51:53.416142Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.416976Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.417348Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.419214Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.419367Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.419514Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.419660Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T20:51:53.420228Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.420918Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.421044Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.421183Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.421255Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.421460Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.421535Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.421653Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.421721Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.421854Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.422131Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.422474Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.422542Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.422651Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.422714Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.422824Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.422918Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.423033Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.423096Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.423213Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.423275Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.423390Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.423465Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.423630Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.423976Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.424088Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.424150Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.424256Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.424319Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.424423Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.424482Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.424590Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.424651Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.424823Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.424893Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.425077Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.425498Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.425609Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.425670Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.425777Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.425837Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.425944Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.426006Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.426110Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.426171Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.426314Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.426375Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.426480Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.426595Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.427131Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.427199Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.427308Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.427369Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.427478Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.427543Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.427654Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.427717Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.427824Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.427964Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.429259Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.429558Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.430283Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.430361Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.430476Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.430540Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.430651Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.430712Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.430826Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.430886Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.430993Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.431089Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.431217Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.431373Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.432048Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.432118Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.432227Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.432294Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.432398Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.432462Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.432574Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.432633Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.446689Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.447400Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.447514Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:53.447661Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.448520Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:53.449173Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.449846Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:53.450153Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.450393Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:53.450630Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.450838Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.450959Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:51:53.451376Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.451604Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:53.451700Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:51:53.451760Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T20:51:53.452636Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:53.453523Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:51:53.455015Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:53.460426Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-05T20:51:53.464147Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-05T20:51:53.471288Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-05T20:51:53.472088Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-05T20:51:53.472312Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-05T20:51:53.477185Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-05T20:51:53.478287Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-05T20:51:54.441949Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.442955Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.446151Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-05T20:51:54.708186Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.709213Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.712460Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-05T20:51:54.923997Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.925065Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:51:54.928369Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-05T20:51:55.089806Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.090814Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.092851Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-05T20:51:55.093810Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-05T20:51:55.095324Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.095383Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.096285Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.096657Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.100348Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-05T20:51:55.101594Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-05T20:51:55.161072Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.162092Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.165244Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-05T20:51:55.276764Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.277852Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.281144Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-05T20:51:55.492764Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.493824Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.496939Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-05T20:51:55.558194Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.559212Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.562229Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-05T20:51:55.592609Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.593568Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.596924Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-05T20:51:55.758323Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.759338Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.762390Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-05T20:51:55.793100Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.794110Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.797018Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-05T20:51:55.826433Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.827452Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.830556Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-05T20:51:55.991975Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.993023Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:55.996449Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-05T20:51:56.057576Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.058622Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.062078Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-05T20:51:56.373748Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.374711Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.377731Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-05T20:51:56.439201Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.440182Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.443049Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-05T20:51:56.472516Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.473503Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.476382Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-05T20:51:56.788392Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.789385Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.792519Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-05T20:51:56.853825Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.854833Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.857782Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-05T20:51:56.919136Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.920197Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.923273Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-05T20:51:56.984510Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.985532Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.989243Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-05T20:51:57.050305Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.051294Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.054897Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-05T20:51:57.165969Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.166910Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.170331Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-05T20:51:57.231199Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.232185Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.235503Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-05T20:51:57.296632Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.296722Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.297617Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.298043Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.301297Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-05T20:51:57.302431Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-05T20:51:57.330505Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.331412Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.334306Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-05T20:51:57.339373Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.340173Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.343235Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-05T20:51:57.372419Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.373388Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.375576Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.376577Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.376889Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-05T20:51:57.379704Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-05T20:51:57.441033Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.441957Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.444870Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-05T20:51:57.506118Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.506997Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.510645Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-05T20:51:57.571608Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.572503Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.575953Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-05T20:51:57.580473Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.581311Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.584452Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-05T20:51:57.613500Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.614370Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.617830Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-05T20:51:57.678649Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.679518Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.682599Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-05T20:51:57.744146Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.745015Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.748414Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-05T20:51:57.909606Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.910476Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.913718Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-05T20:51:57.975017Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.976092Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.979469Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-05T20:51:58.090817Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.091660Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.095571Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-05T20:51:58.406795Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.407610Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.412334Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-05T20:51:58.722951Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.723774Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.726976Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-05T20:51:58.788127Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.788965Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.792032Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-05T20:51:58.822511Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.823305Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.825370Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.826122Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-05T20:51:58.826613Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.829577Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-05T20:51:58.890690Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.890785Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.891556Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.892165Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.895466Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-05T20:51:58.897005Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-05T20:51:58.956166Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.956962Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.960240Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-05T20:51:59.021285Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.022099Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.025706Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-05T20:51:59.136648Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.136743Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.136773Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.137462Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.137754Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.138318Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.142875Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-05T20:51:59.143274Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-05T20:51:59.143893Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-05T20:51:59.173512Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.174311Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.177447Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-05T20:51:59.178331Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.179051Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.182282Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-05T20:51:59.443910Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.444697Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.447780Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-05T20:51:59.476994Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.477758Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.481156Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-05T20:51:59.542244Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.542353Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.543033Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.543574Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.546745Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-05T20:51:59.547939Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-05T20:51:59.607765Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.608968Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.612235Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-05T20:51:59.673391Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.674583Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.678352Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-05T20:51:59.939543Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.940554Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.943849Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-05T20:52:00.004868Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.005958Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.009263Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-05T20:52:00.070071Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.070182Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.071184Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.071747Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.075739Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-05T20:52:00.076339Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-05T20:52:00.136559Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.137547Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.140997Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-05T20:52:00.302151Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.303114Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.306335Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-05T20:52:00.367222Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.368266Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.371467Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-05T20:52:00.633006Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.633705Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.636661Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-05T20:52:00.665966Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.666631Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.670223Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-05T20:52:00.781626Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.782317Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.785258Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-05T20:52:00.815606Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.816184Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.818913Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-05T20:52:00.848286Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.848854Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.851954Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-05T20:52:00.852843Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.853361Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.856327Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-05T20:52:00.885482Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.885562Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.886114Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.886931Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.889889Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-05T20:52:00.890843Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-05T20:52:00.920102Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.920648Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.923887Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-05T20:52:00.936866Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.936947Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.937425Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.937657Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.941270Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-05T20:52:00.942312Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-05T20:52:00.947416Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.947936Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.950633Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-05T20:52:00.981032Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.981117Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.981146Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.981634Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.984442Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-05T20:52:01.013887Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.128238Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.128798Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.131670Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-05T20:52:01.192922Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.224985Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.225569Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.228605Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-05T20:52:01.289803Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.454041Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.454579Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.457611Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-05T20:52:01.487693Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.551824Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.552345Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.555433Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-05T20:52:01.616399Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.780660Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.781139Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.783643Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-05T20:52:01.846581Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.846905Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.847054Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.847301Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.847778Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.852016Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T20:52:01.853484Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T20:52:01.854453Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T20:52:01.914333Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.914410Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.914433Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.914683Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.916514Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.917187Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T20:52:01.919131Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T20:52:01.948869Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.948933Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.949114Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.951468Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T20:52:01.982224Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.050324Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T20:52:12.293690Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T20:52:12.293690Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] 
[2026-06-05T20:52:12.293690Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T20:52:12.293749Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] 
[2026-06-05T20:52:12.293757Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T20:52:12.293766Z] [nf-56019e2c65c95f103ac06c30858a6c66-b44f0-2b6mg] [593_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec