Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/88572080cac8faab76fdfbecb1c1e0/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/39bc146a805831f729bfc6de13b2c5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/39bc146a805831f729bfc6de13b2c5/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-trvg03n5 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 20:58:06,073 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 20:58:07,080 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 20:58:07,277 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 20:58:08,378 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 20:58:08,537 - cnv_pipe.batch.run_model - INFO - Processing cluster 1549 with 189 probes
2026-06-05 20:58:08,997 - cnv_pipe.batch.run_model.cluster1549 - INFO - Child process started for cluster 1549 with 189 probes
2026-06-05 20:59:14,822 - cnv_pipe.batch.run_model.cluster1549 - INFO - Child process finished cluster 1549. Wrote cluster_1549_samples.csv and cluster_1549_params.csv
2026-06-05 20:59:14,823 - cnv_pipe.batch.run_model - INFO - Cluster 1549 finished in 66.29 seconds. Status: SUCCESS