File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/46a1b87dd225e0812eb1da4bf6676c/.command.err
Size
86.1 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr4_22420786-22421189.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXVVo3wR/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXVVo3wR/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXVVo3wR/chr4_22420786-22421189.bed.gz.tbi
[2026-06-05T20:51:57.775273Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T20:51:57.776631Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T20:51:57.776651Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T20:51:57.776657Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T20:51:57.776661Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXVVo3wR'
[2026-06-05T20:51:57.776665Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T20:51:57.776670Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T20:51:57.776674Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T20:51:57.776678Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-05T20:51:57.776681Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T20:51:57.776685Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T20:51:57.776689Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T20:51:57.776692Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T20:51:57.776696Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T20:51:57.777509Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T20:51:57.777602Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T20:51:57.783322Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T20:51:57.784200Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T20:51:57.784486Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T20:51:57.784691Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.785074Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T20:51:57.785569Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.785760Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.786466Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.786587Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.786738Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.786820Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.786946Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.787016Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.788313Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.789329Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.789409Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T20:51:57.789880Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.789974Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.790098Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.790165Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.790279Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.790343Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.790457Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.790518Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.790629Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.790761Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.790876Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.790947Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.791130Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.791468Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.791584Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.791647Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.791757Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.791823Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.791931Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.792028Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.792138Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.792201Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.792315Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.792376Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.792487Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.792588Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.792881Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.793196Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.793389Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.793726Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.793898Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.794295Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.794754Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.794817Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.794927Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.795046Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.795170Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.795239Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.795348Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.795413Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.795519Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.795584Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.795691Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.795948Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.796380Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.796454Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.796561Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.796661Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.796770Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.796829Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.796936Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.796997Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.797103Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.797167Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.797275Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.797337Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.797445Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.797558Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.798223Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.798286Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.798390Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.798453Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.799761Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.800326Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.800459Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.800530Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.800643Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.800707Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.800818Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.800878Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.800989Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.801050Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.801155Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.801229Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.801378Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.802059Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.802168Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.802228Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.802341Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.802405Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.802512Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.802573Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.802684Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.802743Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.817486Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.818075Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.818172Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.818305Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.819265Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.819398Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.819483Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.819882Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.819935Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.820129Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.820703Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.820836Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.821146Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.821298Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.821536Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T20:51:57.821996Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.822586Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.823322Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.824022Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.829666Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-05T20:51:57.830055Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-05T20:51:57.834313Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-05T20:51:57.835460Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-05T20:51:57.839785Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-05T20:51:57.841411Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-05T20:51:57.844292Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-05T20:51:57.845485Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-05T20:51:57.907093Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.908038Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.912042Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-05T20:51:58.073008Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.074077Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.077967Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-05T20:51:58.941000Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.942038Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.945522Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-05T20:51:59.056940Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.057992Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.061263Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-05T20:51:59.172751Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.172832Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.172858Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.173825Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.174429Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.175031Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.178576Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-05T20:51:59.179823Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-05T20:51:59.180669Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-05T20:51:59.390678Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.390778Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.390822Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.391761Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.392239Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.392775Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.396455Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-05T20:51:59.398011Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-05T20:51:59.399240Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-05T20:51:59.457794Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.458771Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.462154Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-05T20:51:59.824247Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.825206Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.828146Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-05T20:51:59.842827Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.843776Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.846729Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-05T20:51:59.859768Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.860637Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.863527Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-05T20:52:00.075407Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.076355Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.079493Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-05T20:52:00.391466Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.392429Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.395386Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-05T20:52:00.424608Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.425479Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.428328Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-05T20:52:00.589944Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.590792Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.594188Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-05T20:52:00.955848Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.955917Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.955943Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.956813Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.957651Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.959281Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.960069Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-05T20:52:00.962750Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-05T20:52:00.963765Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-05T20:52:01.024234Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.024310Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.024335Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.025106Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.025636Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.027151Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.027782Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-05T20:52:01.030007Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-05T20:52:01.030825Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-05T20:52:01.059513Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.060293Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.061196Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.063827Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.064069Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-05T20:52:01.064909Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.067079Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.068499Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-05T20:52:01.069705Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-05T20:52:01.098978Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.099038Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.099067Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.099762Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.101351Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.101815Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.102077Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-05T20:52:01.106068Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-05T20:52:01.106976Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-05T20:52:01.118054Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.118788Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.121442Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-05T20:52:01.134917Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.135700Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.138257Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-05T20:52:01.151829Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.152522Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.155403Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-05T20:52:01.168478Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.169141Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.172155Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-05T20:52:01.173146Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.173882Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.176509Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-05T20:52:01.205692Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.206400Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.209410Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-05T20:52:01.671676Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.672514Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.675411Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-05T20:52:01.706117Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.706862Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.709478Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-05T20:52:01.722951Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.723694Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.726008Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-05T20:52:01.755529Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.756264Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.759136Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-05T20:52:01.870722Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.870794Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.870818Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.871535Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.872005Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.874133Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.875948Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-05T20:52:01.876749Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-05T20:52:01.879599Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-05T20:52:01.908451Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.908520Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.909166Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.909721Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.912775Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-05T20:52:01.913745Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-05T20:52:01.941861Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.942737Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.943033Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.943974Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.946475Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-05T20:52:01.947421Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-05T20:52:01.951795Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.952473Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.955158Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-05T20:52:01.984521Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.984593Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.985235Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.985750Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.989599Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-05T20:52:01.990697Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-05T20:52:02.301015Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.301741Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.305527Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-05T20:52:02.366470Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.367143Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.370207Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-05T20:52:02.431416Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.432039Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.434519Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-05T20:52:02.496190Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.496788Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.499048Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-05T20:52:02.610954Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.611533Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.614146Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-05T20:52:02.643749Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.644389Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.647222Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-05T20:52:02.676468Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.677098Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.679874Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-05T20:52:02.791239Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.791792Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.794737Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-05T20:52:02.855910Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.856525Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.859025Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-05T20:52:02.888494Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.889145Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.891689Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-05T20:52:03.103395Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.104050Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.106695Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-05T20:52:03.168240Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.168841Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.171664Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-05T20:52:03.233069Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.233647Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.236007Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-05T20:52:03.265814Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.266363Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.269080Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-05T20:52:03.270142Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.270733Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.273287Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-05T20:52:03.302734Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.303607Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.303973Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.305891Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.306444Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-05T20:52:03.308783Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-05T20:52:03.370237Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.370297Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.370326Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.370344Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.370873Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.371186Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.371755Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.372058Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.376816Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-05T20:52:03.377280Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-05T20:52:03.378215Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-05T20:52:03.379495Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-05T20:52:03.436149Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.436227Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.436251Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.436782Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.437226Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.438944Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.440839Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-05T20:52:03.441414Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-05T20:52:03.443745Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-05T20:52:03.456846Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.457358Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.460305Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-05T20:52:03.473516Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.474061Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.476307Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-05T20:52:03.481896Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.482427Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.485105Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-05T20:52:03.490385Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.490854Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.493547Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-05T20:52:03.506707Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.507251Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.509796Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-05T20:52:03.539125Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.539777Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.539943Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.542448Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-05T20:52:03.604131Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.604630Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.606905Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-05T20:52:03.669660Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.084405Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.084468Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.084888Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.085454Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.087127Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-05T20:52:04.089536Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-05T20:52:04.118792Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.118866Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.182730Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.183181Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.185471Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-05T20:52:04.215045Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.379137Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.379551Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.381880Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-05T20:52:04.412634Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.626861Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.627275Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.629291Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-05T20:52:04.659279Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.274070Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.274488Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.276645Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-05T20:52:05.306424Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.306721Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.306851Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.307209Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.307506Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.310013Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T20:52:05.312454Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T20:52:05.313552Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T20:52:05.339768Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.339832Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.339853Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.340069Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.340319Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.342889Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T20:52:05.343759Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T20:52:05.373780Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.373852Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.374079Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.376638Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T20:52:05.406085Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:08.374469Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T20:52:16.664983Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T20:52:16.664983Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] 
[2026-06-05T20:52:16.664983Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T20:52:16.665037Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] 
[2026-06-05T20:52:16.665044Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T20:52:16.665051Z] [nf-2246a1b87dd225e0812eb1da4bf6676c-dab91-mqffj] [582_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec