Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/8caa8226071ede3b186c21f4682bef/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/8caa8226071ede3b186c21f4682bef/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/8fc7f5716dfc4a815738382b6d56eb/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/8fc7f5716dfc4a815738382b6d56eb/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-05T20:52:01.234163Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T20:52:01.249552Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T20:52:01.249586Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T20:52:01.249595Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T20:52:01.249603Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXn3Ur8b'
[2026-06-05T20:52:01.249609Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T20:52:01.249617Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T20:52:01.249622Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T20:52:01.249628Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] [RunParameters] memMb: 1523801
[2026-06-05T20:52:01.249633Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T20:52:01.249638Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T20:52:01.249643Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T20:52:01.249648Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T20:52:01.249654Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T20:52:01.250156Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T20:52:01.250267Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T20:52:01.257489Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T20:52:01.258348Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T20:52:01.258493Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T20:52:01.258776Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T20:52:01.259119Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.260237Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.260511Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.260749Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.260870Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.261126Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.261547Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.262041Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.262224Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.262509Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.262719Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.264823Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.265213Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.265396Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T20:52:01.265762Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.265872Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.266018Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.266185Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.266577Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.266656Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.266885Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.266967Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.267103Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.267187Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.267328Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.267406Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.267545Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.267682Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.268117Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.268198Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.268334Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.268458Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.268629Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.268711Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.268850Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.268932Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.269284Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.269578Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.269717Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.269794Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.269933Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.270008Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.270150Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.270230Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.270363Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.270441Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.270585Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.270860Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.271376Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.271457Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.271591Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.271678Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.271814Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.271895Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.272034Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.272109Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.289275Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.289628Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.289715Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.289896Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.289987Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.290091Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.290177Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.290307Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.290390Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.290451Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T20:52:01.292683Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.293762Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.294279Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.294848Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.295330Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.296022Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.296870Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.299180Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.300173Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.303734Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-05T20:52:01.306861Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-05T20:52:01.309312Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-06-05T20:52:01.311916Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-06-05T20:52:01.312960Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-06-05T20:52:01.315986Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T20:52:01.316538Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-05T20:52:01.418799Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.418880Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.419664Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.419915Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.424395Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-05T20:52:02.385360Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.386125Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.389228Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-06-05T20:52:02.450298Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.450991Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.454319Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-06-05T20:52:02.454787Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.455486Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.458276Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-05T20:52:02.519314Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.520012Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.523382Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T20:52:02.634137Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.634887Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.638484Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-06-05T20:52:03.241323Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-05T20:52:03.249819Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.249881Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.250594Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.250978Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.254696Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T20:52:03.255947Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T20:52:03.315384Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.316142Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.319270Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-05T20:52:03.341421Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-06-05T20:52:03.348004Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.348058Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.348685Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.348993Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.352122Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-05T20:52:03.353072Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-06-05T20:52:03.365242Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.365881Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.368804Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T20:52:03.381587Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.382134Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.385187Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-06-05T20:52:03.398180Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.398865Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.401361Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-06-05T20:52:03.863283Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.863974Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.866972Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-06-05T20:52:03.928053Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.928677Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.931707Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-05T20:52:04.343356Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.344075Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.346824Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-06-05T20:52:04.376053Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.376786Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.379497Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T20:52:04.380367Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.380966Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.384042Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-05T20:52:04.412834Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.412926Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.413553Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.413833Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.417021Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-06-05T20:52:04.417888Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-05T20:52:04.578300Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.578989Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.581990Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-06-05T20:52:04.643077Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.643675Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.646800Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-06-05T20:52:04.675591Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.676126Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.678702Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-05T20:52:04.739884Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.739953Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.740489Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.740841Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.744400Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-06-05T20:52:04.745433Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-05T20:52:04.805215Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.805945Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.808830Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T20:52:04.809692Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.810174Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.812997Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-06-05T20:52:04.841927Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.841996Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.842508Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.842818Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.846159Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-06-05T20:52:04.875203Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-06-05T20:52:04.875618Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.875782Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.876578Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.876823Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.877306Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.879241Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.880243Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-06-05T20:52:04.882896Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T20:52:04.884246Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-06-05T20:52:04.911559Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.912101Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.915335Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-06-05T20:52:05.326779Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.327421Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.330724Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-06-05T20:52:05.642122Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.642730Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.645858Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-06-05T20:52:05.706767Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.707296Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.709962Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T20:52:05.739007Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.739449Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.742450Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-05T20:52:05.803472Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.803946Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.807295Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-05T20:52:05.835942Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.836020Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.836536Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.839490Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-05T20:52:05.900473Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.964333Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.964785Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.967860Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-06-05T20:52:05.996647Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:06.210652Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:06.211089Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:06.214388Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-06-05T20:52:06.242868Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.057738Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.058249Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.061024Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-06-05T20:52:07.090148Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.304149Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.304578Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.307563Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-06-05T20:52:07.336717Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.500662Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.501109Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.503997Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-06-05T20:52:07.532919Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:08.197425Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:08.197850Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:08.200416Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T20:52:08.229672Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:08.229913Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:08.230051Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:08.230390Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T20:52:08.230718Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:08.235109Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T20:52:08.236441Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T20:52:08.237473Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T20:52:08.263177Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:08.263232Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:08.263255Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:08.263465Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:08.263746Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:08.266346Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T20:52:08.266986Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T20:52:08.296395Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:08.296457Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:08.296683Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:08.298954Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T20:52:08.328475Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.846789Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T20:52:20.137490Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T20:52:20.137490Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] 
[2026-06-05T20:52:20.137490Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T20:52:20.137563Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] 
[2026-06-05T20:52:20.137571Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T20:52:20.137580Z] [nf-e58caa8226071ede3b186c21f4682bef-ce1ec-27x7k] [757_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec