File Info

Filename
.command.sh
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/5ae7f46e6a4006a02f6bea67e716e9/.command.sh
Size
821 bytes
Task
DAQ:CAT_FASTQ (HCC1395_tumor)
Attempt

Content

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#!/bin/bash -Ceuo pipefail
cat HCC1395_tumor_S1_L001_R1_001.fastq.gz HCC1395_tumor_S1_L002_R1_001.fastq.gz HCC1395_tumor_S1_L003_R1_001.fastq.gz HCC1395_tumor_S1_L004_R1_001.fastq.gz HCC1395_tumor_S1_L005_R1_001.fastq.gz HCC1395_tumor_S1_L006_R1_001.fastq.gz HCC1395_tumor_S1_L007_R1_001.fastq.gz HCC1395_tumor_S1_L008_R1_001.fastq.gz > HCC1395_tumor_R1.fastq.gz
cat HCC1395_tumor_S1_L001_R2_001.fastq.gz HCC1395_tumor_S1_L002_R2_001.fastq.gz HCC1395_tumor_S1_L003_R2_001.fastq.gz HCC1395_tumor_S1_L004_R2_001.fastq.gz HCC1395_tumor_S1_L005_R2_001.fastq.gz HCC1395_tumor_S1_L006_R2_001.fastq.gz HCC1395_tumor_S1_L007_R2_001.fastq.gz HCC1395_tumor_S1_L008_R2_001.fastq.gz > HCC1395_tumor_R2.fastq.gz

cat <<-END_VERSIONS > versions.yml
"DAQ:CAT_FASTQ":
    cat: $(cat --version | head -1 | awk '{print $NF}')
END_VERSIONS