cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --read_filter QualCalFilter,table=HCC1395_BL.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_BL.table.post --algo ReadWriter HCC1395_BL.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:165000001, elapsed 0.1s, est remaining 2.0s, peak mem 359MB, user 0.2s, sys 2.5s, output queue size 8
progress 10% @chr2:78000001, elapsed 0.2s, est remaining 1.7s, peak mem 537MB, user 0.4s, sys 4.9s, output queue size 41
progress 15% @chr2:235000001, elapsed 0.3s, est remaining 1.5s, peak mem 623MB, user 0.6s, sys 7.2s, output queue size 13
progress 20% @chr3:153000001, elapsed 0.4s, est remaining 1.4s, peak mem 725MB, user 0.8s, sys 9.5s, output queue size 19
progress 25% @chr4:115000001, elapsed 0.4s, est remaining 1.3s, peak mem 813MB, user 1.0s, sys 11.8s, output queue size 12
progress 30% @chr5:86000001, elapsed 0.5s, est remaining 1.2s, peak mem 854MB, user 1.2s, sys 14.1s, output queue size 29
progress 35% @chr6:68000001, elapsed 0.6s, est remaining 1.1s, peak mem 966MB, user 1.5s, sys 16.3s, output queue size 15
progress 40% @chr7:32000001, elapsed 0.7s, est remaining 1.0s, peak mem 1010MB, user 1.7s, sys 18.5s, output queue size 23
progress 45% @chr8:60000001, elapsed 0.8s, est remaining 0.9s, peak mem 1182MB, user 1.8s, sys 20.9s, output queue size 65
progress 50% @chr9:74000001, elapsed 0.8s, est remaining 0.8s, peak mem 1272MB, user 2.0s, sys 23.2s, output queue size 17
progress 55% @chr10:94000001, elapsed 0.9s, est remaining 0.7s, peak mem 1305MB, user 2.2s, sys 25.4s, output queue size 1
progress 60% @chr11:121000001, elapsed 1.0s, est remaining 0.7s, peak mem 1379MB, user 2.4s, sys 27.8s, output queue size 2
progress 65% @chr13:14000001, elapsed 1.1s, est remaining 0.6s, peak mem 1412MB, user 2.5s, sys 30.0s, output queue size 1
progress 70% @chr14:61000001, elapsed 1.2s, est remaining 0.5s, peak mem 1458MB, user 2.8s, sys 32.2s, output queue size 6
progress 75% @chr16:15000001, elapsed 1.2s, est remaining 0.4s, peak mem 1512MB, user 2.9s, sys 34.7s, output queue size 14
progress 80% @chr18:1000001, elapsed 1.3s, est remaining 0.3s, peak mem 1544MB, user 3.1s, sys 37.0s, output queue size 14
progress 85% @chr20:23000001, elapsed 1.4s, est remaining 0.2s, peak mem 1644MB, user 3.3s, sys 39.3s, output queue size 19
progress 90% @chrX:47000001, elapsed 1.7s, est remaining 0.2s, peak mem 2796MB, user 5.4s, sys 40.5s, output queue size 114
progress 95% @chrY:44000001, elapsed 1.8s, est remaining 0.1s, peak mem 2817MB, user 7.5s, sys 41.1s, output queue size 276
progress 100% @chr21:41000001, elapsed 3.9s, est remaining 0.0s, peak mem 2844MB, user 19.3s, sys 42.5s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 51395351
output file size: 71692767
reads: 1001089
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.010 real
ReadQualCal::delayed_init: 1 calls 0.006 user 0.001 sys 0.019 real
ReadQualCal::init: 1 calls 0.000 user 0.000 sys 0.006 real
advance: 3219322 calls 1.413 user 5.118 sys 6.817 real
done: 1 calls 0.276 user 0.216 sys 0.494 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.003 user 0.000 sys 3.916 real
fetch: 3219322 calls 0.166 user 5.043 sys 5.179 real
fetch_reads: 3219322 calls 0.304 user 5.170 sys 5.253 real
fetch_ref: 13103 calls 0.045 user 0.014 sys 0.047 real
fetch_vcf: 13103 calls 1.265 user 0.057 sys 1.361 real
idle: 2219 calls 1.019 user 0.298 sys 85.061 real
init: 1 calls 0.010 user 0.001 sys 0.025 real
update: 13298 calls 5.371 user 1.109 sys 7.588 real
write: 3219322 calls 7.368 user 5.011 sys 12.487 real
overall: 2982981632 mem 22.908 user 43.460 sys 5.249 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before HCC1395_BL.table --after HCC1395_BL.table.post HCC1395_BL.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.020 user 0.000 sys 0.025 real
done: 1 calls 0.043 user 0.007 sys 0.055 real
idle: 61 calls 0.002 user 0.000 sys 31.379 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 83640320 mem 0.050 user 0.050 sys 1.057 real