File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/06661c4a75afaaea583f7a38d56b5c/.command.err
Size
63.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr1_68991-70108.bed)
Attempt

Content

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[2026-06-05T20:52:01.161760Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T20:52:01.162837Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T20:52:01.162864Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T20:52:01.162870Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T20:52:01.162874Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXBcyHwq'
[2026-06-05T20:52:01.162878Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T20:52:01.162883Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T20:52:01.162887Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T20:52:01.162890Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] [RunParameters] memMb: 1547923
[2026-06-05T20:52:01.162894Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T20:52:01.162897Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T20:52:01.162901Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T20:52:01.162904Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T20:52:01.162908Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T20:52:01.163461Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T20:52:01.163557Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T20:52:01.169159Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T20:52:01.169998Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T20:52:01.170232Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T20:52:01.170583Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T20:52:01.170791Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.171470Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.171613Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.171831Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.172137Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.172385Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.172667Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.172889Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.173409Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.174067Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.175589Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.176389Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T20:52:01.176623Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.177181Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.177400Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.177483Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.177606Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.177677Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.177795Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.177873Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.178507Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.178687Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.178856Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.178976Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.179118Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.179186Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.179308Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.179371Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.179748Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.180009Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.180306Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.180600Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.180715Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.180777Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.180884Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.180946Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.181052Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.181116Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.181222Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.181294Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.181401Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.181460Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.181578Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.181662Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.182405Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.182794Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.182909Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.182977Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.183143Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.183205Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.183310Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.183413Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.183525Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.183584Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.183691Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.183752Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.183957Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.184432Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.184544Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.184608Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.184717Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.184800Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.184932Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.184999Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.185107Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.185178Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.185287Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.185346Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.200901Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.201686Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.201941Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.202062Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.202791Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.203479Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.203783Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.203954Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.205743Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.206084Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.206482Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.206854Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.207466Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.207817Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.208531Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:52:01.208797Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.208930Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T20:52:01.209617Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.213617Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.214101Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-05T20:52:01.221361Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-05T20:52:01.224086Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T20:52:01.224822Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-05T20:52:01.227872Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-05T20:52:01.232001Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T20:52:01.234461Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-05T20:52:01.235326Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T20:52:01.846580Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.847437Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.850361Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-05T20:52:02.011954Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.012811Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.016044Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-05T20:52:02.177631Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.178482Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.181911Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-05T20:52:02.744689Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.744829Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.745584Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.746294Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.749072Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T20:52:02.750050Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-05T20:52:02.779372Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.780096Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.782494Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T20:52:02.812314Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.812401Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.813047Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.813691Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.816549Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T20:52:02.817677Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-05T20:52:02.845843Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.846524Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.849187Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T20:52:02.878701Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.879399Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.881928Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-05T20:52:02.895379Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.896028Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.898595Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-05T20:52:02.911937Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.912591Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.915448Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T20:52:02.928648Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.929361Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.932125Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-05T20:52:03.094149Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.094913Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.097791Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-05T20:52:03.127195Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.127853Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.130396Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-05T20:52:03.242332Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.243049Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.245955Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T20:52:03.307380Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.307472Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.308108Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.309551Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.311164Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-05T20:52:03.312325Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T20:52:03.341809Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.341882Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.342432Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.344047Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.345699Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T20:52:03.346501Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T20:52:03.376414Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.377076Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.379829Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-05T20:52:03.385224Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.385826Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.388314Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-05T20:52:03.417993Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.418085Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.418681Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.419226Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.421768Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-05T20:52:03.423198Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-05T20:52:03.452603Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.453239Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.455691Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T20:52:03.617712Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.618410Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.620819Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T20:52:03.650627Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.651248Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.653139Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T20:52:03.684037Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.684638Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.686811Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-05T20:52:03.799728Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.799834Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.800409Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.801001Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.804412Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-05T20:52:03.833606Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-05T20:52:03.834253Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.834337Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.834871Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.835463Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.838698Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T20:52:03.839275Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-05T20:52:04.100404Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.101028Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.104273Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-05T20:52:04.133355Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.133943Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.136373Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-05T20:52:04.498925Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.499031Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.499615Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.500232Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.503086Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T20:52:04.531914Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T20:52:04.532980Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.533013Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.533487Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.533762Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.536416Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-05T20:52:04.537617Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T20:52:04.566215Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.566763Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.569040Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T20:52:04.598897Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.599448Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.602386Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T20:52:04.615392Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.615918Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.618245Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-05T20:52:04.631785Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.632307Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.634482Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-05T20:52:04.648932Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.649435Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.651873Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-05T20:52:04.681674Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.682194Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.684573Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T20:52:04.946896Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.947477Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.950254Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T20:52:05.011784Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.012318Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.014803Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-05T20:52:05.028422Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.028919Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.031093Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-05T20:52:05.045693Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.046178Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.048662Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-05T20:52:05.078221Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.078712Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.081255Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T20:52:05.110849Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.111334Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.113276Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.113513Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-05T20:52:05.113942Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.116330Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-05T20:52:05.146174Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.146648Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.148735Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-05T20:52:05.178449Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.292600Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.293055Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.295539Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T20:52:05.324836Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.789760Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.790220Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.792723Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-05T20:52:05.822364Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.822440Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.822842Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.825262Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-05T20:52:05.855005Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.855083Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.855454Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.857893Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T20:52:05.887623Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:06.001707Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:06.001785Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:06.002129Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:06.003457Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-05T20:52:06.004405Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-05T20:52:06.006546Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-05T20:52:06.035917Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:06.035986Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.001663Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.002041Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.004085Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-05T20:52:07.034835Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.035075Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.035199Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.035794Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.037665Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T20:52:07.037898Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.040833Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T20:52:07.041738Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T20:52:07.070376Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.070424Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.070443Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.070613Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.071200Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.073384Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T20:52:07.074276Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T20:52:07.103481Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.103555Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.103738Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.106176Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T20:52:07.135742Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:11.758807Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T20:52:20.050893Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T20:52:20.050893Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] 
[2026-06-05T20:52:20.050893Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T20:52:20.050947Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] 
[2026-06-05T20:52:20.050955Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T20:52:20.050962Z] [nf-e906661c4a75afaaea583f7a38d56b5c-75a30-kw6zc] [594_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec