File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/01835ea268dc4e5bf209aa5acb57c7/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-q7apw222 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 20:57:16,320 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 20:57:17,164 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 20:57:17,332 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 20:57:18,263 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 20:57:18,418 - cnv_pipe.batch.run_model - INFO - Processing cluster 1252 with 170 probes
2026-06-05 20:57:18,784 - cnv_pipe.batch.run_model.cluster1252 - INFO - Child process started for cluster 1252 with 170 probes
2026-06-05 20:58:10,019 - cnv_pipe.batch.run_model.cluster1252 - INFO - Child process finished cluster 1252. Wrote cluster_1252_samples.csv and cluster_1252_params.csv
2026-06-05 20:58:10,020 - cnv_pipe.batch.run_model - INFO - Cluster 1252 finished in 51.60 seconds. Status: SUCCESS