Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/56859355c18397d8bd757b104c5a69/.command.sh
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr6_138229684-138229952.bed.gz.tbi
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/6364050760c5582cbdad0b85841682/HCC1395_BL.recalibrated.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/6364050760c5582cbdad0b85841682/HCC1395_BL.recalibrated.bam.bai
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/56859355c18397d8bd757b104c5a69/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr6_138229684-138229952.bed.gz
==> STAGING COMPLETE (10 inputs)
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXtU8Tmy/chr6_138229684-138229952.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXtU8Tmy/chr6_138229684-138229952.bed.gz.tbi
Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:
/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXtU8Tmy/chr6_138229684-138229952.bed.gz.tbi
[2026-06-05T20:51:57.503796Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T20:51:57.504697Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T20:51:57.504707Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T20:51:57.504712Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T20:51:57.504716Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXtU8Tmy'
[2026-06-05T20:51:57.504720Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T20:51:57.504725Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T20:51:57.504729Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T20:51:57.504733Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-05T20:51:57.504736Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T20:51:57.504740Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T20:51:57.504743Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T20:51:57.504747Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T20:51:57.504751Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T20:51:57.505204Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T20:51:57.505345Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T20:51:57.511481Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T20:51:57.512221Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T20:51:57.512320Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T20:51:57.512604Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T20:51:57.513185Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.513895Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.514002Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.514338Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.514773Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.514906Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.515033Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.515725Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.516103Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.518142Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.518624Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T20:51:57.518692Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.518989Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.519071Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.519189Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.519255Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.519363Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.519427Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.519540Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.519600Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.519793Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.519937Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.520407Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.520669Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.520791Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.520853Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.520971Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.521034Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.521166Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.521232Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.521353Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.521417Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.521532Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.521617Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.521888Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.522310Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.522429Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.522491Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.522602Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.522667Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.522773Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.522835Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.522946Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.523030Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.523136Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.523197Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.523418Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.523938Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.524062Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.524132Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.524242Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.524307Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.524432Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.524495Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.524605Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.524665Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.524776Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.524846Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.525039Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.525247Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.526238Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.526802Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.527232Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.527799Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.527931Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.527999Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.528108Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.528169Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.528280Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.528343Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.528451Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.528515Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.528621Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.528682Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.530455Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.531123Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.531264Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.531349Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.531459Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.531525Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.531635Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.531698Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.531811Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.531871Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.531981Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.532045Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.532226Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.532629Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.533320Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.533387Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.533501Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.533566Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.533672Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.533733Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.533854Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.533916Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.534049Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.534109Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.534378Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.535086Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.535291Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.535374Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.535513Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.535594Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.535708Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.535778Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.535899Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.535974Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.536125Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.536287Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.540673Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.540796Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.541067Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.541138Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.547913Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.551498Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.552009Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.552615Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.553141Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.554012Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.555310Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.556799Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.559260Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.559760Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-05T20:51:57.566145Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0002] Task initiated on local node
[2026-06-05T20:51:57.568411Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0001] Task initiated on local node
[2026-06-05T20:51:57.571339Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0005] Task initiated on local node
[2026-06-05T20:51:57.575335Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-05T20:51:57.577032Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0004] Task initiated on local node
[2026-06-05T20:51:57.578907Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.579208Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.579313Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.579656Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.579731Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.579836Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.579905Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.580051Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.580130Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:57.580190Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T20:51:57.660163Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.661341Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.665676Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0009] Task initiated on local node
[2026-06-05T20:51:58.592613Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0010] Task initiated on local node
[2026-06-05T20:51:58.627287Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-05T20:51:58.628252Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.628301Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.628343Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.629467Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.629994Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.630753Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.634487Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0004] Task initiated on local node
[2026-06-05T20:51:58.636136Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-05T20:51:58.637290Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0008] Task initiated on local node
[2026-06-05T20:51:58.795890Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.797937Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.801407Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0000] Task initiated on local node
[2026-06-05T20:51:59.062958Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.064826Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.067962Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-05T20:51:59.097179Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.098940Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.102067Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0012] Task initiated on local node
[2026-06-05T20:51:59.313676Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.314948Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.318332Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0013] Task initiated on local node
[2026-06-05T20:51:59.529931Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.531242Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.534468Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0001] Task initiated on local node
[2026-06-05T20:51:59.595630Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.596905Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.600344Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-05T20:51:59.912101Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.913402Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.916753Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-05T20:52:00.228052Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.229386Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.232614Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-05T20:52:00.344005Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.345250Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.348112Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0010] Task initiated on local node
[2026-06-05T20:52:00.409436Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.409535Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.410740Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.412615Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.414365Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-05T20:52:00.416064Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0001] Task initiated on local node
[2026-06-05T20:52:00.478648Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.479838Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.483233Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-05T20:52:00.544684Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.545999Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.549542Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-05T20:52:00.578258Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.579426Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.582845Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0008] Task initiated on local node
[2026-06-05T20:52:00.611830Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.612969Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.616478Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0006] Task initiated on local node
[2026-06-05T20:52:00.616750Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.617704Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.621039Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0012] Task initiated on local node
[2026-06-05T20:52:00.882839Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.884055Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.888048Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-05T20:52:00.948690Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.949782Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.953003Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0002] Task initiated on local node
[2026-06-05T20:52:01.013896Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.015057Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.018485Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-05T20:52:01.079520Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.080648Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.084123Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-05T20:52:01.112975Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.114388Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.114748Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.117285Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.117684Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0012] Task initiated on local node
[2026-06-05T20:52:01.120870Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-05T20:52:01.149508Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.150567Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.153768Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0007] Task initiated on local node
[2026-06-05T20:52:01.315148Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.316325Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.319413Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-05T20:52:01.382260Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.382357Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.383368Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.383975Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.387809Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-05T20:52:01.388738Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0011] Task initiated on local node
[2026-06-05T20:52:01.450470Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.451581Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.455029Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-05T20:52:01.515937Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.517045Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.520708Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-05T20:52:01.581614Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.582694Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.585625Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0009] Task initiated on local node
[2026-06-05T20:52:01.647206Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.648272Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.651605Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0005] Task initiated on local node
[2026-06-05T20:52:01.657429Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.658327Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.661090Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0001] Task initiated on local node
[2026-06-05T20:52:01.690516Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.690587Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.691465Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.692007Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.695729Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0004] Task initiated on local node
[2026-06-05T20:52:01.697038Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0010] Task initiated on local node
[2026-06-05T20:52:01.756564Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.757583Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.760502Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0000] Task initiated on local node
[2026-06-05T20:52:01.823108Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.823189Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.824114Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.824768Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.827937Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-05T20:52:01.829058Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T20:52:01.888984Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.889999Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.893429Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-05T20:52:02.054683Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.054775Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.055784Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.056269Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.059509Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-05T20:52:02.060872Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-05T20:52:02.090385Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.091360Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.094057Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.095215Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000] Task initiated on local node
[2026-06-05T20:52:02.095547Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.098603Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-05T20:52:02.161086Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.162046Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.164868Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-05T20:52:02.165836Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.166623Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.169646Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0007] Task initiated on local node
[2026-06-05T20:52:02.199731Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.200634Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.203200Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000] Task initiated on local node
[2026-06-05T20:52:02.203342Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.204040Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.207459Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0003] Task initiated on local node
[2026-06-05T20:52:02.237779Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.238675Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.242019Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-05T20:52:02.605197Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.606227Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.609375Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-05T20:52:02.670866Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.671883Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.674751Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-05T20:52:02.736346Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.737310Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.740332Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-05T20:52:02.769512Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.770470Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.773191Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-05T20:52:02.803300Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.803396Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.804268Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.804750Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.808797Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-05T20:52:02.809843Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-05T20:52:02.871283Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.871399Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.872280Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.874151Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.876868Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-05T20:52:02.877959Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0007] Task initiated on local node
[2026-06-05T20:52:02.907051Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.907911Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.911048Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-05T20:52:02.972550Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.973471Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.976862Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-05T20:52:03.037853Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.038772Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.041935Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0008] Task initiated on local node
[2026-06-05T20:52:03.153358Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.154263Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.157501Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-05T20:52:03.188147Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.188949Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.192216Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0006] Task initiated on local node
[2026-06-05T20:52:03.204912Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.205735Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.208799Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0012] Task initiated on local node
[2026-06-05T20:52:03.221836Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.222622Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.224770Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.225640Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.226038Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0010] Task initiated on local node
[2026-06-05T20:52:03.228619Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-05T20:52:03.258032Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.258105Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.258127Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.258824Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.259304Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.262798Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0004] Task initiated on local node
[2026-06-05T20:52:03.263252Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.263575Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-05T20:52:03.266421Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-05T20:52:03.328167Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.328259Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.329038Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.329685Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.333453Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0011] Task initiated on local node
[2026-06-05T20:52:03.334501Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0002] Task initiated on local node
[2026-06-05T20:52:03.337912Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.338676Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.341406Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-05T20:52:03.370741Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.371523Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.374846Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0003] Task initiated on local node
[2026-06-05T20:52:03.404193Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.404951Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.408553Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0000] Task initiated on local node
[2026-06-05T20:52:03.620097Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.620898Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.624450Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T20:52:03.685326Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.686221Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.689200Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0006] Task initiated on local node
[2026-06-05T20:52:03.702419Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.703196Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.705944Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0003] Task initiated on local node
[2026-06-05T20:52:03.767309Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.768142Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.771402Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-05T20:52:03.832676Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.833510Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.836577Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0005] Task initiated on local node
[2026-06-05T20:52:03.998326Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.999115Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.002172Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-05T20:52:04.032460Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.033211Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.035958Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-05T20:52:04.097187Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.097965Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.100862Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-05T20:52:04.129963Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.130070Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.130772Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.131325Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.134253Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0007] Task initiated on local node
[2026-06-05T20:52:04.135872Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0011] Task initiated on local node
[2026-06-05T20:52:04.164976Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.165764Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.168473Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_005_chr6_0000] Task initiated on local node
[2026-06-05T20:52:04.229918Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.230671Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.233589Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-05T20:52:04.294905Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.295684Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.298946Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-05T20:52:04.327887Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.328516Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.331427Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-05T20:52:04.344361Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.345021Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.347609Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-05T20:52:04.360940Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.361546Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.363960Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-05T20:52:04.377426Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.378024Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.380527Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0009] Task initiated on local node
[2026-06-05T20:52:04.692411Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.693118Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.696285Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000] Task initiated on local node
[2026-06-05T20:52:04.709214Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.709733Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.712152Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0013] Task initiated on local node
[2026-06-05T20:52:04.741879Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.742385Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.744779Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-05T20:52:04.806522Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.806581Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.807064Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.807820Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.810802Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000] Task initiated on local node
[2026-06-05T20:52:04.811752Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-05T20:52:04.842034Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.842091Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.842559Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.843046Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.845615Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0005] Task initiated on local node
[2026-06-05T20:52:04.846435Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0002] Task initiated on local node
[2026-06-05T20:52:04.875490Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.875561Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.876009Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.878310Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0006] Task initiated on local node
[2026-06-05T20:52:04.907962Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.908024Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.908487Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.910696Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0003] Task initiated on local node
[2026-06-05T20:52:04.941233Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.105279Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.105792Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.108913Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0000] Task initiated on local node
[2026-06-05T20:52:05.121757Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.122280Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.124705Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0008] Task initiated on local node
[2026-06-05T20:52:05.154166Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.154233Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.218245Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.218679Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.221127Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0011] Task initiated on local node
[2026-06-05T20:52:05.251643Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.267401Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.267821Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.269922Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0009] Task initiated on local node
[2026-06-05T20:52:05.299581Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.914595Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.915145Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.917586Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-05T20:52:05.947091Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.947402Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.947535Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.948383Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.950159Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T20:52:05.951158Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.951922Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T20:52:05.954052Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T20:52:05.983620Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.983687Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.983710Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.983930Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.984314Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.986953Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T20:52:05.987548Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T20:52:06.016046Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:06.016099Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:06.016306Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:06.018865Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T20:52:06.048646Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:08.115505Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T20:52:16.392786Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T20:52:16.392786Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner]
[2026-06-05T20:52:16.392786Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] workflow version: 2.9.10
[2026-06-05T20:52:16.392839Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner]
[2026-06-05T20:52:16.392846Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T20:52:16.392854Z] [nf-2356859355c18397d8bd757b104c5a69-68f33-kfsd5] [600_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec