Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/07dd48f5b67889eb614b5873d0c846/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/278f819846ff96c6923bdd66ccea66/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/278f819846ff96c6923bdd66ccea66/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/07dd48f5b67889eb614b5873d0c846/.command.run
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX4UyU3v/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX4UyU3v/chr4_22420786-22421189.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX4UyU3v/chr4_22420786-22421189.bed.gz.tbi
[2026-06-05T20:51:56.824450Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T20:51:56.825195Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T20:51:56.825203Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T20:51:56.825207Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T20:51:56.825211Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX4UyU3v'
[2026-06-05T20:51:56.825215Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T20:51:56.825220Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T20:51:56.825223Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T20:51:56.825227Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-05T20:51:56.825230Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T20:51:56.825234Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T20:51:56.825237Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T20:51:56.825241Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T20:51:56.825244Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T20:51:56.826075Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T20:51:56.826136Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T20:51:56.832022Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T20:51:56.832675Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T20:51:56.832968Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T20:51:56.833132Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.833654Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T20:51:56.833973Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.834328Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.834466Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.834564Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.834703Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.834791Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.835142Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.835504Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.836500Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.837135Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.837360Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.837499Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T20:51:56.838256Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.838766Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.838874Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.839005Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.839074Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.839191Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.839254Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.839445Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.839514Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.839741Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.839820Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.840259Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.840404Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.840563Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.840637Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.840763Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.840836Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.840954Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.841022Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.841156Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.841330Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.841756Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.841826Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.841939Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.842027Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.842142Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.842203Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.842316Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.842381Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.842494Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.842559Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.842668Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.843095Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.843359Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.843425Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.843605Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.843675Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.843819Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.843884Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.843993Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.844055Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.844163Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.844223Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.844339Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.844462Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.845098Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.845163Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.845274Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.845334Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.845458Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.845546Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.845672Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.845752Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.845890Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.845964Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.846190Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.846752Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.846864Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.846929Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.847035Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.847097Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.848313Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.849172Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.849308Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.849380Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.849493Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.849559Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.849671Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.849732Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.849844Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.849905Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.850014Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.850082Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.850265Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.851098Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.851209Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.851290Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.851404Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.851468Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.851574Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.851636Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.851748Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.851807Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.868149Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.868520Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.868630Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.868762Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.869576Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.869696Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.869981Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.870128Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.870507Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.870746Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.871046Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.871588Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.871957Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.872321Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.872823Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.873346Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.873651Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T20:51:56.874439Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.875241Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.882392Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-05T20:51:56.885433Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-05T20:51:56.887789Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-05T20:51:56.892053Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-05T20:51:56.892983Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-05T20:51:56.897151Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-05T20:51:56.898810Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-05T20:51:57.109417Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.110407Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.113399Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-05T20:51:57.426594Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.427610Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.430716Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-05T20:51:57.842795Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.843876Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.847117Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-05T20:51:57.895192Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-05T20:51:57.908322Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.909253Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.912380Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-05T20:51:57.973865Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.974942Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.978149Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-05T20:51:58.039306Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.040316Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.043420Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-05T20:51:58.555742Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.556793Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.559672Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-05T20:51:58.621259Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.622287Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.625015Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-05T20:51:58.655626Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.656604Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.659614Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-05T20:51:58.821257Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.822274Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.825300Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-05T20:51:58.936645Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.937621Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.940939Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-05T20:51:59.002087Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.003114Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.006378Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-05T20:51:59.011046Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.011868Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.014866Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-05T20:51:59.076242Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.077270Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.080692Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-05T20:51:59.192878Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.193954Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.197174Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-05T20:51:59.226120Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.227137Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.229659Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.230315Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-05T20:51:59.231026Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.234360Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-05T20:51:59.263486Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.264450Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.267813Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-05T20:51:59.296536Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.297452Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.300229Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-05T20:51:59.361643Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.363111Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.366494Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-05T20:51:59.728119Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.729048Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.732368Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-05T20:51:59.794697Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.795744Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.800269Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-05T20:51:59.860519Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.861512Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.865119Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-05T20:51:59.893862Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.894816Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.897757Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-05T20:51:59.927177Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.928096Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.931201Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-05T20:52:00.092690Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.093596Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.097011Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-05T20:52:00.358435Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.359333Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.362543Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-05T20:52:00.375653Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.376538Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.379588Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-05T20:52:00.408831Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.408917Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.409726Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.410204Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.413469Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-05T20:52:00.414965Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-05T20:52:00.427948Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.428783Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.432121Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-05T20:52:00.994187Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.994290Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.995114Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.995394Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.999541Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-05T20:52:01.000188Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-05T20:52:01.060262Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.061183Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.064592Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-05T20:52:01.326322Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.326431Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.327260Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.327816Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.331603Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-05T20:52:01.362868Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-05T20:52:01.394646Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.394733Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.395559Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.396337Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.399940Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-05T20:52:01.401121Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-05T20:52:01.563014Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.563908Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.567367Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-05T20:52:01.571750Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.572569Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.575397Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-05T20:52:01.604710Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.605586Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.609011Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-05T20:52:01.609529Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.610238Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.613051Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-05T20:52:01.674514Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.675359Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.678850Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-05T20:52:01.707869Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.708672Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.711752Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-05T20:52:01.773080Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.773918Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.777466Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-05T20:52:01.838246Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.838967Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.842164Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-05T20:52:01.904346Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.905143Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.908515Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-05T20:52:01.969765Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.970585Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.974047Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-05T20:52:02.034927Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.035815Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.039157Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-05T20:52:02.150350Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.151163Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.154065Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-05T20:52:02.183348Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.184148Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.187280Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-05T20:52:02.348793Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.349598Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.352854Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-05T20:52:02.415180Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.416024Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.419394Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-05T20:52:02.481578Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.481687Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.481713Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.482402Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.482923Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.485421Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.487776Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-05T20:52:02.488107Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-05T20:52:02.490954Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-05T20:52:02.519856Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.519929Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.520617Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.520850Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.525084Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-05T20:52:02.525887Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-05T20:52:02.585103Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.585972Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.589112Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-05T20:52:02.850555Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.851342Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.854623Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-05T20:52:03.266979Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.267761Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.270586Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-05T20:52:03.299931Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.300658Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.303553Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-05T20:52:03.308419Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.309037Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.311922Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-05T20:52:03.341316Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.341983Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.345243Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-05T20:52:03.373971Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.374667Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.377617Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-05T20:52:03.378364Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.378954Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.381863Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-05T20:52:03.411285Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.412158Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.415040Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-05T20:52:03.415874Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.416445Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.419188Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-05T20:52:03.448279Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.448369Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.448957Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.449307Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.452425Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-05T20:52:03.453558Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-05T20:52:03.513595Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.513683Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.513710Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.514310Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.514895Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.516816Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.517578Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-05T20:52:03.520334Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-05T20:52:03.521338Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-05T20:52:03.534486Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.535081Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.537947Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-05T20:52:03.551114Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.551184Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.551694Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.552178Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.555655Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-05T20:52:03.556772Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-05T20:52:03.569894Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.570441Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.573500Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-05T20:52:03.586847Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.587419Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.590347Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-05T20:52:03.619895Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.619969Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.620512Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.621179Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.624309Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-05T20:52:03.625363Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-05T20:52:03.638238Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.638797Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.641463Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-05T20:52:03.671187Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.671268Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.935987Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.936582Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.939610Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-05T20:52:03.968729Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.283351Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.283910Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.287030Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-05T20:52:04.316282Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.348369Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.348884Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.351828Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-05T20:52:04.412977Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.527090Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.527574Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.530634Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-05T20:52:04.560623Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.592493Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.592963Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.596005Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-05T20:52:04.657183Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.372404Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.372937Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.375349Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-05T20:52:05.404961Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.405251Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.405383Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.405922Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.406310Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.409641Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T20:52:05.410501Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T20:52:05.412769Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T20:52:05.438258Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.438314Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.438338Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.438536Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.439179Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.441817Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T20:52:05.442765Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T20:52:05.472101Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.472171Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.472367Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.474325Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T20:52:05.504110Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.470809Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T20:52:15.715080Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T20:52:15.715080Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] 
[2026-06-05T20:52:15.715080Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T20:52:15.715124Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] 
[2026-06-05T20:52:15.715130Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T20:52:15.715137Z] [nf-8807dd48f5b67889eb614b5873d0c846-eacdf-tr7r7] [601_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec