Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/ccd06f039e27dbb5004ade1bca9f01/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/7df0dd603900a4e96831ac49153a79/Sig_18_tissue.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/ccd06f039e27dbb5004ade1bca9f01/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/foresight_clarity_targets_hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/7df0dd603900a4e96831ac49153a79/Sig_18_tissue.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --algo HsMetricAlgo --targets_list targets/foresight_clarity_targets_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed Sig_18_tissue_foresight_clarity_targets_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:167000001, elapsed 0.0s, est remaining 0.6s, peak mem 100MB, user 0.6s, sys 0.1s, output queue size 14
progress 10% @chr2:75000001, elapsed 0.1s, est remaining 0.5s, peak mem 100MB, user 1.3s, sys 0.2s, output queue size 19
progress 15% @chr2:238000001, elapsed 0.1s, est remaining 0.5s, peak mem 100MB, user 2.0s, sys 0.3s, output queue size 16
progress 20% @chr3:145000001, elapsed 0.1s, est remaining 0.5s, peak mem 100MB, user 2.7s, sys 0.4s, output queue size 10
progress 25% @chr4:120000001, elapsed 0.1s, est remaining 0.4s, peak mem 100MB, user 3.5s, sys 0.5s, output queue size 11
progress 30% @chr5:85000001, elapsed 0.2s, est remaining 0.4s, peak mem 100MB, user 4.2s, sys 0.6s, output queue size 5
progress 35% @chr6:62000001, elapsed 0.2s, est remaining 0.4s, peak mem 100MB, user 4.9s, sys 0.7s, output queue size 10
progress 40% @chr7:52000001, elapsed 0.2s, est remaining 0.3s, peak mem 100MB, user 5.7s, sys 0.8s, output queue size 4
progress 45% @chr8:65000001, elapsed 0.3s, est remaining 0.3s, peak mem 100MB, user 6.5s, sys 0.9s, output queue size 3
progress 50% @chr9:62000001, elapsed 0.3s, est remaining 0.3s, peak mem 100MB, user 7.2s, sys 1.0s, output queue size 18
progress 55% @chr10:96000001, elapsed 0.3s, est remaining 0.3s, peak mem 100MB, user 8.0s, sys 1.1s, output queue size 15
progress 60% @chr11:127000001, elapsed 0.3s, est remaining 0.2s, peak mem 100MB, user 8.6s, sys 1.2s, output queue size 6
progress 65% @chr13:22000001, elapsed 0.4s, est remaining 0.2s, peak mem 100MB, user 9.4s, sys 1.2s, output queue size 5
progress 70% @chr14:56000001, elapsed 0.4s, est remaining 0.2s, peak mem 100MB, user 10.2s, sys 1.4s, output queue size 5
progress 75% @chr16:15000001, elapsed 0.4s, est remaining 0.1s, peak mem 100MB, user 11.0s, sys 1.4s, output queue size 13
progress 80% @chr17:82000001, elapsed 0.4s, est remaining 0.1s, peak mem 100MB, user 11.7s, sys 1.5s, output queue size 9
progress 85% @chr20:18000001, elapsed 0.5s, est remaining 0.1s, peak mem 100MB, user 12.4s, sys 1.5s, output queue size 11
progress 90% @chrX:36000001, elapsed 0.5s, est remaining 0.1s, peak mem 132MB, user 13.1s, sys 1.8s, output queue size 114
progress 95% @chrY:33000001, elapsed 0.6s, est remaining 0.0s, peak mem 145MB, user 13.6s, sys 2.6s, output queue size 271
progress 100% @chr21:41000001, elapsed 0.9s, est remaining 0.0s, peak mem 157MB, user 14.6s, sys 3.2s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 50047062
reads: 1001838
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.097 user 1.665 sys 3.190 real
done: 1 calls 0.000 user 0.000 sys 0.001 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.002 user 0.002 sys 0.860 real
idle: 77 calls 0.017 user 0.003 sys 38.519 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 165437440 mem 15.349 user 3.469 sys 1.994 real