Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/88572080cac8faab76fdfbecb1c1e0/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/499218d3355fb99f30937f83e3d0a1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/499218d3355fb99f30937f83e3d0a1/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-9g1wmw9c because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 20:56:20,592 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 20:56:21,418 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 20:56:21,610 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 20:56:22,563 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 20:56:22,721 - cnv_pipe.batch.run_model - INFO - Processing cluster 923 with 146 probes
2026-06-05 20:56:23,138 - cnv_pipe.batch.run_model.cluster923 - INFO - Child process started for cluster 923 with 146 probes
2026-06-05 20:57:08,498 - cnv_pipe.batch.run_model.cluster923 - INFO - Child process finished cluster 923. Wrote cluster_923_samples.csv and cluster_923_params.csv
2026-06-05 20:57:08,499 - cnv_pipe.batch.run_model - INFO - Cluster 923 finished in 45.78 seconds. Status: SUCCESS