File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/ebe30085765e2aa80ec644a7c9c2c2/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-crl7ur9k because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 20:57:33,233 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 20:57:34,098 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 20:57:34,296 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 20:57:35,331 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 20:57:35,543 - cnv_pipe.batch.run_model - INFO - Processing cluster 1286 with 173 probes
2026-06-05 20:57:35,927 - cnv_pipe.batch.run_model.cluster1286 - INFO - Child process started for cluster 1286 with 173 probes
2026-06-05 20:58:29,290 - cnv_pipe.batch.run_model.cluster1286 - INFO - Child process finished cluster 1286. Wrote cluster_1286_samples.csv and cluster_1286_params.csv
2026-06-05 20:58:29,292 - cnv_pipe.batch.run_model - INFO - Cluster 1286 finished in 53.75 seconds. Status: SUCCESS