File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/95ce207928907f817a545a2fb78628/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr10_74133927-74134264.bed)
Attempt

Content

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[2026-06-05T20:51:58.585610Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T20:51:58.587001Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T20:51:58.587035Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T20:51:58.587043Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T20:51:58.587048Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXnd9eIF'
[2026-06-05T20:51:58.587052Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T20:51:58.587057Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T20:51:58.587061Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T20:51:58.587065Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-05T20:51:58.587069Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T20:51:58.587073Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T20:51:58.587077Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T20:51:58.587105Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T20:51:58.587112Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T20:51:58.588147Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T20:51:58.588234Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T20:51:58.594266Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T20:51:58.594979Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T20:51:58.595274Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T20:51:58.595492Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T20:51:58.595734Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.596499Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.596609Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.596685Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.596807Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.596874Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.597220Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.597496Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.597667Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.597910Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.597993Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.598886Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.599320Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.601120Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.601246Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.601741Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T20:51:58.602111Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.602330Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.602724Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.602976Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.603190Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.603261Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.603373Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.603441Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.603551Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.603614Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.603813Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.603882Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.604003Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.604279Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.604620Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.604699Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.604818Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.604880Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.604991Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.605057Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.605165Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.605229Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.605336Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.605397Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.605509Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.605608Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.605857Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.606260Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.606382Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.606446Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.606560Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.606675Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.606788Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.606858Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.606969Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.607035Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.607145Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.607208Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.607596Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.608003Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.608128Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.608204Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.608320Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.608384Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.608495Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.608559Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.608673Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.608737Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.608845Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.608917Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.609077Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.609221Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.609700Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.610236Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.610783Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.610850Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.610956Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.611024Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.629623Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.629898Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.630024Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.630322Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.631142Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.631305Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.631493Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.631809Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.632096Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.632660Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.632979Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.633715Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.634585Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.635059Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.635974Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.636271Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:58.637104Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T20:51:58.637399Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.638996Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.642342Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-05T20:51:58.646948Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-05T20:51:58.649613Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-05T20:51:58.653646Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-05T20:51:58.658678Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T20:51:58.659371Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-05T20:51:58.663497Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-05T20:51:58.664352Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T20:51:58.728247Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.729037Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.734597Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-05T20:51:58.793479Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.794338Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.798361Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T20:51:59.360700Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.361612Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.365274Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-05T20:51:59.677089Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.677884Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.681765Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-05T20:51:59.792381Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.793182Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.796990Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-05T20:52:00.058794Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.058881Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.059686Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.060064Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.064052Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-05T20:52:00.065247Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-05T20:52:00.124759Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.125620Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.129447Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T20:52:00.190152Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.190255Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.191023Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.191404Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.194514Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T20:52:00.195619Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-05T20:52:00.255812Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.256769Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.260242Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-05T20:52:00.371819Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.372745Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.375761Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-05T20:52:00.436971Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.437059Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.437830Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.438212Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.441793Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T20:52:00.443063Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-05T20:52:00.503167Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.504012Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.507202Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T20:52:00.568129Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.568955Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.572565Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T20:52:00.633401Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.634272Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.637733Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T20:52:00.999531Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.000452Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.003909Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-05T20:52:01.064822Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.064935Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.065720Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.066114Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.069690Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T20:52:01.070915Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T20:52:01.074392Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.075117Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.078624Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-05T20:52:01.107196Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.108348Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.108701Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.111223Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.113130Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-05T20:52:01.114228Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-05T20:52:01.175622Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.176593Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.180333Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T20:52:01.291407Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.292385Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.296235Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-05T20:52:01.325110Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.325896Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.329443Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-05T20:52:01.891901Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.892677Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.895866Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-05T20:52:02.257816Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.258635Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.262106Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T20:52:02.322978Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.323770Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.327498Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-05T20:52:02.438351Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.439177Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.442475Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-05T20:52:02.447220Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.447897Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.450809Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-05T20:52:02.662422Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.663163Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.666700Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-05T20:52:02.727485Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.728283Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.731979Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T20:52:02.793038Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.793781Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.797039Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-05T20:52:02.858001Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.858698Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.862282Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T20:52:02.923439Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.924187Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.927891Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-05T20:52:02.956525Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.957296Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.960485Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T20:52:03.021512Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.022192Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.024369Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.025107Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.026889Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T20:52:03.027954Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-05T20:52:03.057393Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.058036Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.060851Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T20:52:03.090086Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.090171Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.090735Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.091022Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.094163Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T20:52:03.094955Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-05T20:52:03.123518Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.124142Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.127279Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-05T20:52:03.156284Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.156898Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.159820Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-05T20:52:03.188771Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.189373Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.192152Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T20:52:03.221324Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.221931Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.224751Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-05T20:52:03.253856Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.253956Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.254507Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.254864Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.257952Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-05T20:52:03.258899Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-05T20:52:03.270878Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.271448Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.274496Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-05T20:52:03.287362Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.287902Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.290508Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T20:52:03.319914Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.320496Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.322318Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.322922Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.323347Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T20:52:03.325806Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T20:52:03.387067Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.387145Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.387660Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.388030Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.390986Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-05T20:52:03.392042Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T20:52:03.419995Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.420059Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.420526Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.420820Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.423705Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T20:52:03.424975Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-05T20:52:03.436636Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.437153Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.440018Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-05T20:52:03.453176Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.453665Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.455662Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.456292Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.458138Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T20:52:03.459032Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-05T20:52:03.472353Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.504540Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.719069Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.719559Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.722346Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-05T20:52:03.783663Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.048376Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.048887Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.052038Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-05T20:52:04.113310Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.277557Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.278002Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.281060Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-05T20:52:04.342501Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.556908Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.557354Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.560278Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-05T20:52:04.621407Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.785671Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.786081Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.788802Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-05T20:52:04.818048Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.233011Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.233458Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.236816Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T20:52:05.265458Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.265737Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.265865Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.266433Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.266891Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.272329Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T20:52:05.272725Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T20:52:05.273365Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T20:52:05.299442Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.299679Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.301684Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.301753Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.302041Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.302669Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T20:52:05.304933Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T20:52:05.334048Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.334111Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.334288Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:05.336855Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T20:52:05.366314Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:09.189055Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T20:52:17.475831Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T20:52:17.475831Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] 
[2026-06-05T20:52:17.475831Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T20:52:17.475895Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] 
[2026-06-05T20:52:17.475909Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T20:52:17.475917Z] [nf-9895ce207928907f817a545a2fb78628-a483c-tbwm7] [592_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec