File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/7294935e101b4c76e329327f988fcf/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-3_yacr8c because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 20:56:40,837 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 20:56:41,643 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 20:56:41,812 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 20:56:42,668 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 20:56:42,734 - cnv_pipe.batch.run_model - INFO - Processing cluster 1047 with 163 probes
2026-06-05 20:56:43,183 - cnv_pipe.batch.run_model.cluster1047 - INFO - Child process started for cluster 1047 with 163 probes
2026-06-05 20:57:29,396 - cnv_pipe.batch.run_model.cluster1047 - INFO - Child process finished cluster 1047. Wrote cluster_1047_samples.csv and cluster_1047_params.csv
2026-06-05 20:57:29,397 - cnv_pipe.batch.run_model - INFO - Cluster 1047 finished in 46.66 seconds. Status: SUCCESS