.command.sh - Workdir - DAQ:QC_JSON_TO_CSV (qc_json_to_csv)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/168f08ab851e2fa7c8b79d47fa94e7/.command.sh
Size: 249 bytes
Task: DAQ:QC_JSON_TO_CSV (qc_json_to_csv)
Attempt

Content

#!/bin/bash -Ceuo pipefail
qc_json_to_csv.py \
    -i postdedup_qc.json \
    -o qc_metrics.csv \


cat <<-END_VERSIONS > versions.yml
"DAQ:QC_JSON_TO_CSV":
    python: $(python --version | sed 's/Python //g')
    qc_json_to_csv: 1.0.0
END_VERSIONS