File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/2c3a81c42a1c2d7de3458bcd968263/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr19_15162349-15162662.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXTXS46c/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXTXS46c/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXTXS46c/chr19_15162349-15162662.bed.gz.tbi
[2026-06-05T20:51:56.337525Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T20:51:56.430568Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T20:51:56.430586Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T20:51:56.430592Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T20:51:56.430599Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXTXS46c'
[2026-06-05T20:51:56.430604Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T20:51:56.430610Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T20:51:56.430615Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T20:51:56.430620Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] [RunParameters] memMb: 1523801
[2026-06-05T20:51:56.430625Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T20:51:56.430630Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T20:51:56.430635Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T20:51:56.430641Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T20:51:56.430647Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T20:51:56.431015Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T20:51:56.431108Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T20:51:56.437951Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T20:51:56.438576Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T20:51:56.438717Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T20:51:56.438877Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T20:51:56.439125Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.439525Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.439637Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.439726Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.439875Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.439957Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.440100Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.440181Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.440508Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.440788Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.440869Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.441284Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.442902Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.443679Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.443904Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T20:51:56.444097Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.444264Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.444356Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.444504Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.444586Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.444808Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.444890Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.445031Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.445144Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.445414Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.445688Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.445833Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.445914Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.446065Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.446151Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.446288Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.446371Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.446537Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.446616Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.447006Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.447263Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.447406Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.447487Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.447627Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.447704Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.447843Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.447917Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.448052Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.448131Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.449271Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.449640Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.449784Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.449863Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.450093Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.450186Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.450332Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.450412Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.450551Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.450632Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.450867Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.451396Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.451538Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.451620Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.451756Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.451833Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.451970Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.452044Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.452185Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.452265Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.452527Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.453100Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.469728Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.470311Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.470400Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.470599Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.470692Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.470807Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.470888Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.471022Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.471111Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T20:51:56.472352Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T20:51:56.480350Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.481001Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.481208Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.481412Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.481664Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.481850Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.482009Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.482235Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.482400Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:56.497081Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-05T20:51:56.502312Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-05T20:51:56.505294Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T20:51:56.506511Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-05T20:51:56.507956Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-05T20:51:56.508834Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-05T20:51:57.798832Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.799648Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.803076Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T20:51:57.863937Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.864758Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:51:57.867747Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-05T20:51:58.028989Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.029850Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.032650Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-05T20:51:58.093792Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.095000Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.098161Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T20:51:58.359565Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.360453Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.363182Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-05T20:51:58.491054Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-05T20:51:58.524352Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.524403Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.525105Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.525441Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.528579Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-05T20:51:58.530000Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T20:51:58.557444Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.558188Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.561110Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-05T20:51:58.589948Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.590720Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.592717Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.593671Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-05T20:51:58.593762Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.596029Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-05T20:51:58.757631Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.758345Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.760851Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-05T20:51:58.789966Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.790636Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.793795Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T20:51:58.854690Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.855475Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-05T20:51:58.858276Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-05T20:51:59.470383Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.471196Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.474385Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T20:51:59.784364Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T20:51:59.785785Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.785856Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.785895Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.786656Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.786883Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.787248Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.789819Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T20:51:59.790870Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T20:51:59.791832Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-05T20:51:59.851368Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.851422Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.851449Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.852113Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.852378Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.852891Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.855924Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-05T20:51:59.858817Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-05T20:51:59.860027Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T20:51:59.870449Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.871177Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.874101Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T20:51:59.878834Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.879548Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.882174Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-05T20:51:59.887172Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.887833Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.890591Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T20:51:59.919578Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.919624Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.920202Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.920430Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.923435Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-05T20:51:59.924198Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-05T20:51:59.984440Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.985063Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-05T20:51:59.987509Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-05T20:52:00.048759Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.049370Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.052539Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T20:52:00.113314Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.113953Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.116698Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-05T20:52:00.177770Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.178365Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.181557Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T20:52:00.342652Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.342725Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.343308Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.343598Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.347208Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-05T20:52:00.348372Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-05T20:52:00.407821Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.408551Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:00.412119Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-05T20:52:01.023738Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.024416Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.027370Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-05T20:52:01.088593Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.089292Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.092414Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T20:52:01.153514Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.154232Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.157329Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T20:52:01.268272Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.268928Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.272786Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-05T20:52:01.332979Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.333589Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.336806Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T20:52:01.349487Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.350069Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.353103Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-05T20:52:01.365912Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.366538Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.369629Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-05T20:52:01.398642Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.399309Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.402478Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-05T20:52:01.431266Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.431915Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.434984Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T20:52:01.495909Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.495975Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.496538Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.496772Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.500406Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T20:52:01.501370Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-05T20:52:01.561275Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.561872Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.565066Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T20:52:01.593960Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.594611Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.597571Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-05T20:52:01.909127Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.909818Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.913092Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-05T20:52:01.941793Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.942862Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.943158Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.944020Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.946892Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T20:52:01.948576Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-05T20:52:01.977154Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.977786Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.979718Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.980436Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-05T20:52:01.980731Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T20:52:01.983464Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-05T20:52:02.012451Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.012527Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.577275Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.577852Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.580654Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T20:52:02.641852Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.642392Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T20:52:02.645288Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T20:52:02.706356Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.020741Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.021278Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.024175Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-05T20:52:03.029038Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.029480Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.032177Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-05T20:52:03.061221Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.061273Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.125031Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.125424Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-05T20:52:03.127911Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-05T20:52:03.157154Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.172303Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.172370Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.172872Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.173103Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.176031Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T20:52:04.177018Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-05T20:52:04.205052Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.205521Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.205696Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.205821Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.206031Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.206435Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.209864Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T20:52:04.211155Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T20:52:04.212358Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T20:52:04.239219Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.239259Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.239436Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.239731Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.242825Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T20:52:04.243369Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.243611Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T20:52:04.274839Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.274878Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.275043Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T20:52:04.277098Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T20:52:04.306629Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T20:52:07.023682Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T20:52:15.318290Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T20:52:15.318290Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] 
[2026-06-05T20:52:15.318290Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T20:52:15.318338Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] 
[2026-06-05T20:52:15.318346Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T20:52:15.318354Z] [nf-6c2c3a81c42a1c2d7de3458bcd968263-dcf37-mhbkh] [745_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec