Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/88572080cac8faab76fdfbecb1c1e0/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/d2a3710b25516b2b5eb72e0429a3e9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/d2a3710b25516b2b5eb72e0429a3e9/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-ahakkvfg because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 20:57:03,480 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 20:57:04,335 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 20:57:04,536 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 20:57:05,552 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 20:57:05,722 - cnv_pipe.batch.run_model - INFO - Processing cluster 1175 with 158 probes
2026-06-05 20:57:06,101 - cnv_pipe.batch.run_model.cluster1175 - INFO - Child process started for cluster 1175 with 158 probes
2026-06-05 20:57:56,015 - cnv_pipe.batch.run_model.cluster1175 - INFO - Child process finished cluster 1175. Wrote cluster_1175_samples.csv and cluster_1175_params.csv
2026-06-05 20:57:56,017 - cnv_pipe.batch.run_model - INFO - Cluster 1175 finished in 50.29 seconds. Status: SUCCESS