Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/88572080cac8faab76fdfbecb1c1e0/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/966eb439bad0ff0fba17c0eb35496a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/15d805edc8fe17a1a9196eb8902a07/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/15d805edc8fe17a1a9196eb8902a07/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-tc90sd18 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 20:56:12,822 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 20:56:13,634 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 20:56:13,806 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 20:56:14,764 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 20:56:14,955 - cnv_pipe.batch.run_model - INFO - Processing cluster 882 with 195 probes
2026-06-05 20:56:15,341 - cnv_pipe.batch.run_model.cluster882 - INFO - Child process started for cluster 882 with 195 probes
2026-06-05 20:57:12,239 - cnv_pipe.batch.run_model.cluster882 - INFO - Child process finished cluster 882. Wrote cluster_882_samples.csv and cluster_882_params.csv
2026-06-05 20:57:12,240 - cnv_pipe.batch.run_model - INFO - Cluster 882 finished in 57.28 seconds. Status: SUCCESS