HCC1395_tumor_basic_stats.tsv

Filename: HCC1395_tumor_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-s3-gitlab-results/daq/build2809215/baseline-run/63858629/reports/raw_qc/seqtool/HCC1395_tumor/HCC1395_tumor_basic_stats.tsv
Size: 1.3 KB
Workflow Run: gitlab-daq-build2809215-baseline-run-63858629
Published: Jun 08, 2026 10:35 AM

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
HCC1395_tumor.md	999980	4	4e-06	830860	0.169123	415427	0.67209	0.327905	0.770536	0.229464	159	265	414	414949	0.998849	319733	95216	558413	272443	291.923995	119.878181	169120	0.981974	0.949782	0.949782	143959508	xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed	22	0.0	0.0	0.0	0.0	0.0	0.121106	0.372444	0.40275	0.701526	1.390145	0.964232	1.342879	0.925106	0.940034	0.951489	1.421121	0.959815	0.0	0.0	0.0	0.0	0.0	1.116645	1.777627	622.0	0.0	0.0	0.0	0.0	26.0	0.997229	1.0	371427	104985	0.009802	0.002771	37892425	0.0	76	-15.1661	-0.0016	37922265

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