Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/1f8d437761990ed890e1456d2296f8/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/0e3833f8292d4609c4ae3d27659649/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/0e3833f8292d4609c4ae3d27659649/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-af9alhid because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 17:39:49,368 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 17:39:50,221 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 17:39:50,393 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 17:39:51,462 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 17:39:51,530 - cnv_pipe.batch.run_model - INFO - Processing cluster 594 with 188 probes
2026-06-08 17:39:51,906 - cnv_pipe.batch.run_model.cluster594 - INFO - Child process started for cluster 594 with 188 probes
2026-06-08 17:40:50,981 - cnv_pipe.batch.run_model.cluster594 - INFO - Child process finished cluster 594. Wrote cluster_594_samples.csv and cluster_594_params.csv
2026-06-08 17:40:50,982 - cnv_pipe.batch.run_model - INFO - Cluster 594 finished in 59.45 seconds. Status: SUCCESS