Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/effda6cfffe3d0e0c9e2713a9c91f1/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/981bbb6fecd40b817ddc7930c036d0/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/981bbb6fecd40b817ddc7930c036d0/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/effda6cfffe3d0e0c9e2713a9c91f1/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T17:36:20.307123Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T17:36:20.307709Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T17:36:20.307725Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T17:36:20.307731Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T17:36:20.307737Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXywFcrD'
[2026-06-08T17:36:20.307741Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T17:36:20.307746Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T17:36:20.307749Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T17:36:20.307753Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T17:36:20.307756Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T17:36:20.307760Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T17:36:20.307763Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T17:36:20.307767Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T17:36:20.307771Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T17:36:20.308698Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T17:36:20.308757Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T17:36:20.314447Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T17:36:20.315177Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T17:36:20.315434Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T17:36:20.315626Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T17:36:20.315867Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.316200Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.316310Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.316380Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.316496Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.316562Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.316770Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.316840Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.317076Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.317369Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.317563Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.317702Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.317775Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.317982Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.318186Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.321105Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T17:36:20.321195Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.321768Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.321942Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.322015Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.322197Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.322271Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.322384Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.322451Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.322566Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.322807Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.323122Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.323187Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.323300Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.323367Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.323475Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.323539Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.323662Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.323724Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.323834Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.323899Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.324008Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.324186Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.324575Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.324764Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.325290Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.325594Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.325706Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.325768Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.326238Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.326311Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.326425Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.326490Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.326758Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.327131Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.327238Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.327306Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.327414Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.327475Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.327583Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.327642Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.327753Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.327815Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.327921Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.327984Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.328093Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.328153Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.328265Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.328494Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.329013Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.329080Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.329185Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.329245Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.344463Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.344556Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.344627Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.344784Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.344854Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.344940Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.345009Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.346435Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.346769Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.347275Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T17:36:20.357151Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.357784Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.358455Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.360205Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.361019Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.361716Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T17:36:20.362037Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.365295Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.367420Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.368352Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T17:36:20.368606Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.369797Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-08T17:36:20.372536Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T17:36:20.375803Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-08T17:36:20.382110Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-08T17:36:20.383908Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T17:36:20.468071Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T17:36:20.489048Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.489173Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.489200Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.489988Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.490754Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.491209Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.495994Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-08T17:36:20.498422Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-08T17:36:20.499887Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-08T17:36:21.108951Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.109789Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.113195Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-08T17:36:21.625610Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.626563Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.630124Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T17:36:21.741209Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.742074Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.745706Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-08T17:36:22.257737Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.258580Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.262170Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-08T17:36:22.291221Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.292051Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.295834Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T17:36:22.356548Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.357414Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.360921Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T17:36:22.421853Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.422643Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.425838Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-08T17:36:22.488220Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.489091Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.492686Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T17:36:22.754195Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.755011Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.758232Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T17:36:22.771316Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.772069Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.775505Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-08T17:36:22.804339Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.805135Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.808422Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-08T17:36:22.813031Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.813729Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.816757Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T17:36:22.877850Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.878655Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.882578Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-08T17:36:23.344958Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.345719Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.349218Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T17:36:23.410278Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.411075Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.414604Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-08T17:36:23.525701Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.526512Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.529948Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T17:36:23.558850Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.559577Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.562738Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T17:36:23.591930Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.592648Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.596376Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T17:36:23.597280Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.597903Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.600823Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T17:36:23.662085Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.662819Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.666023Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T17:36:23.695128Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.695848Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.698379Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.698991Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-08T17:36:23.699431Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.702345Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T17:36:23.764030Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.764147Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.764841Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.765253Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.769145Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T17:36:23.770583Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-08T17:36:23.831583Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.831702Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.832344Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.832676Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.836134Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-08T17:36:23.836830Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.837450Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-08T17:36:23.838250Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.841406Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-08T17:36:23.870472Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.870567Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.871200Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.871835Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.875551Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-08T17:36:23.877010Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T17:36:23.939831Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.940541Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.944698Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T17:36:24.456205Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.456918Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.460318Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-08T17:36:24.521443Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.521549Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.521585Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.522185Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.522812Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.524741Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.527065Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-08T17:36:24.528991Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T17:36:24.530205Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T17:36:24.590743Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.590856Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.590885Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.591471Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.592184Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.594713Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.595207Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-08T17:36:24.597969Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-08T17:36:24.599169Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-08T17:36:24.659379Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.659489Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.660075Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.660939Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.664719Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-08T17:36:24.665869Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-08T17:36:24.727105Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.727745Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.731586Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T17:36:25.394623Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.395197Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.398563Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T17:36:25.459720Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.460361Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.464196Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-08T17:36:25.925862Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.926553Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.930394Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-08T17:36:25.991184Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.991770Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.994912Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-08T17:36:26.056261Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.056352Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.056869Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.058827Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.060979Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-08T17:36:26.062038Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T17:36:26.124061Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.124163Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.124662Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.125353Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.129063Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-08T17:36:26.129872Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-08T17:36:26.290355Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.290932Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.294103Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T17:36:26.355424Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.569843Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.569951Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.570412Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.572388Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.573955Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-08T17:36:26.575245Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-08T17:36:26.636980Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.637060Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.637087Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.637542Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.640560Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-08T17:36:26.641449Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.641848Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.644510Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-08T17:36:26.674899Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.676450Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.940913Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.941379Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.944625Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-08T17:36:27.005991Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.872305Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.872923Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.875983Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-08T17:36:27.936920Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.050983Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.051534Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.054325Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-08T17:36:28.115402Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.115729Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.115890Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.116323Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.118349Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.119117Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T17:36:28.122109Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T17:36:28.122793Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T17:36:28.150758Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.150849Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.150883Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.151187Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.151740Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.154830Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T17:36:28.181044Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T17:36:28.183798Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.187186Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.187422Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.190111Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T17:36:28.219264Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.887248Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T17:36:39.196632Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T17:36:39.196632Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] 
[2026-06-08T17:36:39.196632Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T17:36:39.196698Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] 
[2026-06-08T17:36:39.196705Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T17:36:39.196712Z] [nf-2eeffda6cfffe3d0e0c9e2713a9c91f1-38a1e-6lf69] [616_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec