Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/c91808389271f40ed112dd828ea442/HCC1395_BL_counts.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/d5c9f215dd395fbfad2287dd98465f/HCC1395_tumor_counts.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/136abe6aeaeb22d710f907eec064c3/Sig_18_tissue_counts.tsv
  Downloading: s3://natera-platform-sandbox/platform_projects/altera_cnv/altera_v3_panel.bed
  Downloading: s3://natera-platform-sandbox/platform_projects/altera_cnv/altera_v3_variable_regions.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/d0188555368c1b2134ec9c05435455/Sig_18_Blood_counts.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/15/8363d91b79f03cb1507c078f8b211b/germline_cnv_input.csv
==> STAGING COMPLETE (9 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-cjjyxet7 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 17:36:12,934 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Load count data for processing
2026-06-08 17:36:14,400 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Data loaded
2026-06-08 17:36:14,405 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Find low probe mask, low sample mask, and 2D outlier mask. Autosomes only.
2026-06-08 17:36:14,411 - cnv_pipe.cnv_pipe.batch.mask - INFO - Iteration 0, outliers: 77564
2026-06-08 17:36:14,702 - cnv_pipe.cnv_pipe.batch.mask - INFO - Iteration 1, outliers: 907
2026-06-08 17:36:14,981 - cnv_pipe.cnv_pipe.batch.mask - INFO - Iteration 2, outliers: 24
2026-06-08 17:36:15,219 - cnv_pipe.cnv_pipe.batch.mask - INFO - Iteration 3, outliers: 2
2026-06-08 17:36:15,445 - cnv_pipe.cnv_pipe.batch.mask - INFO - Iteration 4, outliers: 1
2026-06-08 17:36:15,676 - cnv_pipe.cnv_pipe.batch.mask - INFO - Iteration 5, outliers: 0
2026-06-08 17:36:15,908 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Masks obtained
2026-06-08 17:36:15,908 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Correct counts based on melting temperature
2026-06-08 17:36:16,044 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Corrected counts obtained
2026-06-08 17:36:16,044 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Refind masks with melting-temperature corrected counts. Autosomes only.
2026-06-08 17:36:16,048 - cnv_pipe.cnv_pipe.batch.mask - INFO - Iteration 0, outliers: 77564
2026-06-08 17:36:16,305 - cnv_pipe.cnv_pipe.batch.mask - INFO - Iteration 1, outliers: 896
2026-06-08 17:36:16,570 - cnv_pipe.cnv_pipe.batch.mask - INFO - Iteration 2, outliers: 27
2026-06-08 17:36:16,832 - cnv_pipe.cnv_pipe.batch.mask - INFO - Iteration 3, outliers: 0
2026-06-08 17:36:17,095 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Masks obtained, from melting-temperature corrected counts
2026-06-08 17:36:17,095 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Redo melting-temperature correction with new masks
2026-06-08 17:36:17,404 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Corrected counts obtained, using second round of masks
2026-06-08 17:36:17,405 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Get effective sample size per probe from covariance of nearby probes, autosomes
2026-06-08 17:36:19,698 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 196292. MinCovDet requires more samples than features.
2026-06-08 17:36:19,699 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 196293. MinCovDet requires more samples than features.
2026-06-08 17:36:19,699 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 196294. MinCovDet requires more samples than features.
2026-06-08 17:36:19,700 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 196295. MinCovDet requires more samples than features.
2026-06-08 17:36:19,775 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 429777. MinCovDet requires more samples than features.
2026-06-08 17:36:19,775 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 429778. MinCovDet requires more samples than features.
2026-06-08 17:36:19,776 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 429779. MinCovDet requires more samples than features.
2026-06-08 17:36:19,776 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (2) for probe 429785. MinCovDet requires more samples than features.
2026-06-08 17:36:19,777 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (2) for probe 429786. MinCovDet requires more samples than features.
2026-06-08 17:36:19,777 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 429797. MinCovDet requires more samples than features.
2026-06-08 17:36:19,777 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 429798. MinCovDet requires more samples than features.
2026-06-08 17:36:19,778 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 429799. MinCovDet requires more samples than features.
2026-06-08 17:36:19,778 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 429801. MinCovDet requires more samples than features.
2026-06-08 17:36:19,778 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 429803. MinCovDet requires more samples than features.
2026-06-08 17:36:19,779 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 429804. MinCovDet requires more samples than features.
2026-06-08 17:36:19,779 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 429806. MinCovDet requires more samples than features.
2026-06-08 17:36:19,780 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 429807. MinCovDet requires more samples than features.
2026-06-08 17:36:19,780 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 429808. MinCovDet requires more samples than features.
2026-06-08 17:36:19,780 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 429809. MinCovDet requires more samples than features.
2026-06-08 17:36:19,781 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 429827. MinCovDet requires more samples than features.
2026-06-08 17:36:19,781 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 429828. MinCovDet requires more samples than features.
2026-06-08 17:36:19,781 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 429829. MinCovDet requires more samples than features.
2026-06-08 17:36:19,782 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 429830. MinCovDet requires more samples than features.
2026-06-08 17:36:19,782 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 429831. MinCovDet requires more samples than features.
2026-06-08 17:36:19,798 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 429855. MinCovDet requires more samples than features.
2026-06-08 17:36:19,799 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 429856. MinCovDet requires more samples than features.
2026-06-08 17:36:19,799 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 429857. MinCovDet requires more samples than features.
2026-06-08 17:36:20,143 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 429931. MinCovDet requires more samples than features.
2026-06-08 17:36:20,143 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 429932. MinCovDet requires more samples than features.
2026-06-08 17:36:20,143 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 429933. MinCovDet requires more samples than features.
2026-06-08 17:36:20,144 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (2) for probe 429938. MinCovDet requires more samples than features.
2026-06-08 17:36:20,144 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (2) for probe 429939. MinCovDet requires more samples than features.
2026-06-08 17:36:20,144 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (2) for probe 429940. MinCovDet requires more samples than features.
2026-06-08 17:36:20,145 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (2) for probe 429941. MinCovDet requires more samples than features.
2026-06-08 17:36:20,145 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 429942. MinCovDet requires more samples than features.
2026-06-08 17:36:20,146 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 429943. MinCovDet requires more samples than features.
2026-06-08 17:36:20,146 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 429944. MinCovDet requires more samples than features.
2026-06-08 17:36:20,146 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (2) for probe 429945. MinCovDet requires more samples than features.
2026-06-08 17:36:20,147 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (2) for probe 429946. MinCovDet requires more samples than features.
2026-06-08 17:36:20,147 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (2) for probe 429947. MinCovDet requires more samples than features.
2026-06-08 17:36:20,147 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (2) for probe 429948. MinCovDet requires more samples than features.
2026-06-08 17:36:20,148 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (2) for probe 429949. MinCovDet requires more samples than features.
2026-06-08 17:36:20,148 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (2) for probe 429950. MinCovDet requires more samples than features.
2026-06-08 17:36:20,148 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 429951. MinCovDet requires more samples than features.
2026-06-08 17:36:20,149 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 429952. MinCovDet requires more samples than features.
2026-06-08 17:36:20,149 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 429953. MinCovDet requires more samples than features.
2026-06-08 17:36:20,149 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 429954. MinCovDet requires more samples than features.
2026-06-08 17:36:20,150 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 429955. MinCovDet requires more samples than features.
2026-06-08 17:36:20,150 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 429956. MinCovDet requires more samples than features.
2026-06-08 17:36:20,300 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 429975. MinCovDet requires more samples than features.
2026-06-08 17:36:20,300 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 429976. MinCovDet requires more samples than features.
2026-06-08 17:36:20,301 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 429977. MinCovDet requires more samples than features.
2026-06-08 17:36:21,933 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430178. MinCovDet requires more samples than features.
2026-06-08 17:36:21,934 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430179. MinCovDet requires more samples than features.
2026-06-08 17:36:21,934 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430180. MinCovDet requires more samples than features.
2026-06-08 17:36:22,193 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430214. MinCovDet requires more samples than features.
2026-06-08 17:36:22,193 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430215. MinCovDet requires more samples than features.
2026-06-08 17:36:22,193 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430216. MinCovDet requires more samples than features.
2026-06-08 17:36:22,325 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430232. MinCovDet requires more samples than features.
2026-06-08 17:36:22,325 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430233. MinCovDet requires more samples than features.
2026-06-08 17:36:22,326 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430234. MinCovDet requires more samples than features.
2026-06-08 17:36:22,326 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430235. MinCovDet requires more samples than features.
2026-06-08 17:36:22,326 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430236. MinCovDet requires more samples than features.
2026-06-08 17:36:22,327 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430237. MinCovDet requires more samples than features.
2026-06-08 17:36:22,409 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430249. MinCovDet requires more samples than features.
2026-06-08 17:36:22,409 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430250. MinCovDet requires more samples than features.
2026-06-08 17:36:22,410 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430251. MinCovDet requires more samples than features.
2026-06-08 17:36:22,597 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430274. MinCovDet requires more samples than features.
2026-06-08 17:36:22,598 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430275. MinCovDet requires more samples than features.
2026-06-08 17:36:22,598 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430276. MinCovDet requires more samples than features.
2026-06-08 17:36:22,599 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430277. MinCovDet requires more samples than features.
2026-06-08 17:36:24,946 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430569. MinCovDet requires more samples than features.
2026-06-08 17:36:25,067 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430584. MinCovDet requires more samples than features.
2026-06-08 17:36:25,068 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430585. MinCovDet requires more samples than features.
2026-06-08 17:36:25,068 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430586. MinCovDet requires more samples than features.
2026-06-08 17:36:25,068 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430587. MinCovDet requires more samples than features.
2026-06-08 17:36:25,069 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430588. MinCovDet requires more samples than features.
2026-06-08 17:36:25,069 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430589. MinCovDet requires more samples than features.
2026-06-08 17:36:25,069 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430590. MinCovDet requires more samples than features.
2026-06-08 17:36:25,070 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430591. MinCovDet requires more samples than features.
2026-06-08 17:36:25,166 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430603. MinCovDet requires more samples than features.
2026-06-08 17:36:25,167 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430604. MinCovDet requires more samples than features.
2026-06-08 17:36:27,437 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430885. MinCovDet requires more samples than features.
2026-06-08 17:36:27,438 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430886. MinCovDet requires more samples than features.
2026-06-08 17:36:27,438 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430887. MinCovDet requires more samples than features.
2026-06-08 17:36:27,439 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 430888. MinCovDet requires more samples than features.
2026-06-08 17:36:29,507 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431155. MinCovDet requires more samples than features.
2026-06-08 17:36:29,507 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431156. MinCovDet requires more samples than features.
2026-06-08 17:36:29,508 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431157. MinCovDet requires more samples than features.
2026-06-08 17:36:29,603 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431170. MinCovDet requires more samples than features.
2026-06-08 17:36:30,264 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431258. MinCovDet requires more samples than features.
2026-06-08 17:36:30,264 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431259. MinCovDet requires more samples than features.
2026-06-08 17:36:30,265 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431260. MinCovDet requires more samples than features.
2026-06-08 17:36:30,265 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431261. MinCovDet requires more samples than features.
2026-06-08 17:36:30,265 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431262. MinCovDet requires more samples than features.
2026-06-08 17:36:30,266 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431263. MinCovDet requires more samples than features.
2026-06-08 17:36:30,266 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431264. MinCovDet requires more samples than features.
2026-06-08 17:36:30,267 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431265. MinCovDet requires more samples than features.
2026-06-08 17:36:30,267 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431266. MinCovDet requires more samples than features.
2026-06-08 17:36:31,142 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431375. MinCovDet requires more samples than features.
2026-06-08 17:36:31,143 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431376. MinCovDet requires more samples than features.
2026-06-08 17:36:31,143 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431377. MinCovDet requires more samples than features.
2026-06-08 17:36:31,178 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431382. MinCovDet requires more samples than features.
2026-06-08 17:36:31,179 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431383. MinCovDet requires more samples than features.
2026-06-08 17:36:31,179 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431384. MinCovDet requires more samples than features.
2026-06-08 17:36:31,179 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431385. MinCovDet requires more samples than features.
2026-06-08 17:36:32,505 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431567. MinCovDet requires more samples than features.
2026-06-08 17:36:32,505 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431568. MinCovDet requires more samples than features.
2026-06-08 17:36:32,643 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431587. MinCovDet requires more samples than features.
2026-06-08 17:36:32,705 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431595. MinCovDet requires more samples than features.
2026-06-08 17:36:32,706 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431596. MinCovDet requires more samples than features.
2026-06-08 17:36:32,706 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431597. MinCovDet requires more samples than features.
2026-06-08 17:36:32,706 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431598. MinCovDet requires more samples than features.
2026-06-08 17:36:32,707 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431599. MinCovDet requires more samples than features.
2026-06-08 17:36:32,707 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431600. MinCovDet requires more samples than features.
2026-06-08 17:36:32,778 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431609. MinCovDet requires more samples than features.
2026-06-08 17:36:32,778 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431610. MinCovDet requires more samples than features.
2026-06-08 17:36:33,050 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431644. MinCovDet requires more samples than features.
2026-06-08 17:36:33,051 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431645. MinCovDet requires more samples than features.
2026-06-08 17:36:33,051 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431646. MinCovDet requires more samples than features.
2026-06-08 17:36:33,051 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431647. MinCovDet requires more samples than features.
2026-06-08 17:36:35,173 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431936. MinCovDet requires more samples than features.
2026-06-08 17:36:35,174 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431937. MinCovDet requires more samples than features.
2026-06-08 17:36:35,174 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431938. MinCovDet requires more samples than features.
2026-06-08 17:36:35,174 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431939. MinCovDet requires more samples than features.
2026-06-08 17:36:35,234 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431947. MinCovDet requires more samples than features.
2026-06-08 17:36:35,235 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 431948. MinCovDet requires more samples than features.
2026-06-08 17:36:35,735 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432011. MinCovDet requires more samples than features.
2026-06-08 17:36:35,735 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432012. MinCovDet requires more samples than features.
2026-06-08 17:36:35,736 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432013. MinCovDet requires more samples than features.
2026-06-08 17:36:35,736 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432014. MinCovDet requires more samples than features.
2026-06-08 17:36:35,736 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432015. MinCovDet requires more samples than features.
2026-06-08 17:36:35,737 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432016. MinCovDet requires more samples than features.
2026-06-08 17:36:35,737 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432017. MinCovDet requires more samples than features.
2026-06-08 17:36:35,737 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432020. MinCovDet requires more samples than features.
2026-06-08 17:36:35,738 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432021. MinCovDet requires more samples than features.
2026-06-08 17:36:35,738 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432022. MinCovDet requires more samples than features.
2026-06-08 17:36:35,767 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432028. MinCovDet requires more samples than features.
2026-06-08 17:36:35,768 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432029. MinCovDet requires more samples than features.
2026-06-08 17:36:35,768 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432030. MinCovDet requires more samples than features.
2026-06-08 17:36:35,821 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432037. MinCovDet requires more samples than features.
2026-06-08 17:36:35,821 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432038. MinCovDet requires more samples than features.
2026-06-08 17:36:35,821 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432039. MinCovDet requires more samples than features.
2026-06-08 17:36:35,822 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432040. MinCovDet requires more samples than features.
2026-06-08 17:36:35,906 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432051. MinCovDet requires more samples than features.
2026-06-08 17:36:35,906 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432052. MinCovDet requires more samples than features.
2026-06-08 17:36:35,906 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432053. MinCovDet requires more samples than features.
2026-06-08 17:36:35,907 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432054. MinCovDet requires more samples than features.
2026-06-08 17:36:35,907 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432055. MinCovDet requires more samples than features.
2026-06-08 17:36:35,907 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432056. MinCovDet requires more samples than features.
2026-06-08 17:36:35,908 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432057. MinCovDet requires more samples than features.
2026-06-08 17:36:35,908 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432058. MinCovDet requires more samples than features.
2026-06-08 17:36:36,080 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432082. MinCovDet requires more samples than features.
2026-06-08 17:36:36,081 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432083. MinCovDet requires more samples than features.
2026-06-08 17:36:36,081 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432084. MinCovDet requires more samples than features.
2026-06-08 17:36:36,081 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432085. MinCovDet requires more samples than features.
2026-06-08 17:36:36,082 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432086. MinCovDet requires more samples than features.
2026-06-08 17:36:36,082 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432087. MinCovDet requires more samples than features.
2026-06-08 17:36:36,083 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432088. MinCovDet requires more samples than features.
2026-06-08 17:36:36,083 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432089. MinCovDet requires more samples than features.
2026-06-08 17:36:36,083 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432090. MinCovDet requires more samples than features.
2026-06-08 17:36:36,084 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432091. MinCovDet requires more samples than features.
2026-06-08 17:36:36,084 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432092. MinCovDet requires more samples than features.
2026-06-08 17:36:36,084 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432093. MinCovDet requires more samples than features.
2026-06-08 17:36:36,085 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432094. MinCovDet requires more samples than features.
2026-06-08 17:36:36,085 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432095. MinCovDet requires more samples than features.
2026-06-08 17:36:36,085 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432096. MinCovDet requires more samples than features.
2026-06-08 17:36:36,086 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432097. MinCovDet requires more samples than features.
2026-06-08 17:36:36,086 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432098. MinCovDet requires more samples than features.
2026-06-08 17:36:36,086 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432099. MinCovDet requires more samples than features.
2026-06-08 17:36:36,087 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432100. MinCovDet requires more samples than features.
2026-06-08 17:36:36,087 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432101. MinCovDet requires more samples than features.
2026-06-08 17:36:36,087 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432102. MinCovDet requires more samples than features.
2026-06-08 17:36:36,088 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432103. MinCovDet requires more samples than features.
2026-06-08 17:36:36,143 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432111. MinCovDet requires more samples than features.
2026-06-08 17:36:36,143 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432112. MinCovDet requires more samples than features.
2026-06-08 17:36:36,144 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432113. MinCovDet requires more samples than features.
2026-06-08 17:36:36,144 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432114. MinCovDet requires more samples than features.
2026-06-08 17:36:36,144 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432115. MinCovDet requires more samples than features.
2026-06-08 17:36:36,145 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432116. MinCovDet requires more samples than features.
2026-06-08 17:36:36,145 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432117. MinCovDet requires more samples than features.
2026-06-08 17:36:36,145 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432118. MinCovDet requires more samples than features.
2026-06-08 17:36:36,146 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432119. MinCovDet requires more samples than features.
2026-06-08 17:36:36,146 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432121. MinCovDet requires more samples than features.
2026-06-08 17:36:36,146 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432122. MinCovDet requires more samples than features.
2026-06-08 17:36:36,147 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432123. MinCovDet requires more samples than features.
2026-06-08 17:36:36,147 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432124. MinCovDet requires more samples than features.
2026-06-08 17:36:36,147 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432125. MinCovDet requires more samples than features.
2026-06-08 17:36:36,148 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432126. MinCovDet requires more samples than features.
2026-06-08 17:36:36,148 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432127. MinCovDet requires more samples than features.
2026-06-08 17:36:36,148 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432128. MinCovDet requires more samples than features.
2026-06-08 17:36:36,149 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432129. MinCovDet requires more samples than features.
2026-06-08 17:36:36,149 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432130. MinCovDet requires more samples than features.
2026-06-08 17:36:36,150 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432131. MinCovDet requires more samples than features.
2026-06-08 17:36:36,150 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432132. MinCovDet requires more samples than features.
2026-06-08 17:36:36,150 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432133. MinCovDet requires more samples than features.
2026-06-08 17:36:36,151 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432134. MinCovDet requires more samples than features.
2026-06-08 17:36:36,151 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432135. MinCovDet requires more samples than features.
2026-06-08 17:36:36,151 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432136. MinCovDet requires more samples than features.
2026-06-08 17:36:36,152 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432137. MinCovDet requires more samples than features.
2026-06-08 17:36:36,152 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432138. MinCovDet requires more samples than features.
2026-06-08 17:36:36,152 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432139. MinCovDet requires more samples than features.
2026-06-08 17:36:36,153 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432140. MinCovDet requires more samples than features.
2026-06-08 17:36:36,153 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432141. MinCovDet requires more samples than features.
2026-06-08 17:36:36,153 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432142. MinCovDet requires more samples than features.
2026-06-08 17:36:36,154 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432143. MinCovDet requires more samples than features.
2026-06-08 17:36:36,154 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432144. MinCovDet requires more samples than features.
2026-06-08 17:36:36,154 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432145. MinCovDet requires more samples than features.
2026-06-08 17:36:36,155 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432146. MinCovDet requires more samples than features.
2026-06-08 17:36:36,155 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432147. MinCovDet requires more samples than features.
2026-06-08 17:36:36,155 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432148. MinCovDet requires more samples than features.
2026-06-08 17:36:36,156 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432149. MinCovDet requires more samples than features.
2026-06-08 17:36:36,156 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432150. MinCovDet requires more samples than features.
2026-06-08 17:36:36,156 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432151. MinCovDet requires more samples than features.
2026-06-08 17:36:36,157 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432152. MinCovDet requires more samples than features.
2026-06-08 17:36:36,157 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432153. MinCovDet requires more samples than features.
2026-06-08 17:36:36,157 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432154. MinCovDet requires more samples than features.
2026-06-08 17:36:36,158 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432155. MinCovDet requires more samples than features.
2026-06-08 17:36:36,158 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432156. MinCovDet requires more samples than features.
2026-06-08 17:36:36,158 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432157. MinCovDet requires more samples than features.
2026-06-08 17:36:36,159 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432158. MinCovDet requires more samples than features.
2026-06-08 17:36:36,159 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432159. MinCovDet requires more samples than features.
2026-06-08 17:36:36,159 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432160. MinCovDet requires more samples than features.
2026-06-08 17:36:36,160 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432161. MinCovDet requires more samples than features.
2026-06-08 17:36:36,160 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432162. MinCovDet requires more samples than features.
2026-06-08 17:36:36,160 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432163. MinCovDet requires more samples than features.
2026-06-08 17:36:36,161 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432164. MinCovDet requires more samples than features.
2026-06-08 17:36:36,161 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 432165. MinCovDet requires more samples than features.
2026-06-08 17:36:36,161 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 432166. MinCovDet requires more samples than features.
2026-06-08 17:36:36,162 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 432167. MinCovDet requires more samples than features.
2026-06-08 17:36:36,162 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432168. MinCovDet requires more samples than features.
2026-06-08 17:36:36,162 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432169. MinCovDet requires more samples than features.
2026-06-08 17:36:36,163 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432170. MinCovDet requires more samples than features.
2026-06-08 17:36:36,163 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432171. MinCovDet requires more samples than features.
2026-06-08 17:36:36,163 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432172. MinCovDet requires more samples than features.
2026-06-08 17:36:36,164 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432173. MinCovDet requires more samples than features.
2026-06-08 17:36:36,164 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432174. MinCovDet requires more samples than features.
2026-06-08 17:36:36,164 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432175. MinCovDet requires more samples than features.
2026-06-08 17:36:36,165 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432176. MinCovDet requires more samples than features.
2026-06-08 17:36:36,165 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432177. MinCovDet requires more samples than features.
2026-06-08 17:36:36,165 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432178. MinCovDet requires more samples than features.
2026-06-08 17:36:36,166 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432179. MinCovDet requires more samples than features.
2026-06-08 17:36:36,166 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432180. MinCovDet requires more samples than features.
2026-06-08 17:36:36,166 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432181. MinCovDet requires more samples than features.
2026-06-08 17:36:36,167 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432182. MinCovDet requires more samples than features.
2026-06-08 17:36:36,167 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432183. MinCovDet requires more samples than features.
2026-06-08 17:36:36,167 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432184. MinCovDet requires more samples than features.
2026-06-08 17:36:36,168 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432185. MinCovDet requires more samples than features.
2026-06-08 17:36:36,168 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432186. MinCovDet requires more samples than features.
2026-06-08 17:36:36,168 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432187. MinCovDet requires more samples than features.
2026-06-08 17:36:36,169 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432188. MinCovDet requires more samples than features.
2026-06-08 17:36:36,227 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432198. MinCovDet requires more samples than features.
2026-06-08 17:36:36,228 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432199. MinCovDet requires more samples than features.
2026-06-08 17:36:36,228 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432200. MinCovDet requires more samples than features.
2026-06-08 17:36:36,277 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432207. MinCovDet requires more samples than features.
2026-06-08 17:36:36,277 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432208. MinCovDet requires more samples than features.
2026-06-08 17:36:36,277 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432209. MinCovDet requires more samples than features.
2026-06-08 17:36:36,278 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432210. MinCovDet requires more samples than features.
2026-06-08 17:36:36,334 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432217. MinCovDet requires more samples than features.
2026-06-08 17:36:36,334 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432218. MinCovDet requires more samples than features.
2026-06-08 17:36:36,334 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432219. MinCovDet requires more samples than features.
2026-06-08 17:36:36,518 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432242. MinCovDet requires more samples than features.
2026-06-08 17:36:36,518 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432243. MinCovDet requires more samples than features.
2026-06-08 17:36:36,702 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432266. MinCovDet requires more samples than features.
2026-06-08 17:36:36,702 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432267. MinCovDet requires more samples than features.
2026-06-08 17:36:36,703 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432268. MinCovDet requires more samples than features.
2026-06-08 17:36:36,703 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432269. MinCovDet requires more samples than features.
2026-06-08 17:36:41,477 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432844. MinCovDet requires more samples than features.
2026-06-08 17:36:41,478 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432845. MinCovDet requires more samples than features.
2026-06-08 17:36:41,478 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432846. MinCovDet requires more samples than features.
2026-06-08 17:36:41,479 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432847. MinCovDet requires more samples than features.
2026-06-08 17:36:41,479 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432848. MinCovDet requires more samples than features.
2026-06-08 17:36:41,479 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432849. MinCovDet requires more samples than features.
2026-06-08 17:36:41,480 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432850. MinCovDet requires more samples than features.
2026-06-08 17:36:41,623 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432868. MinCovDet requires more samples than features.
2026-06-08 17:36:41,624 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 432869. MinCovDet requires more samples than features.
2026-06-08 17:36:42,926 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433037. MinCovDet requires more samples than features.
2026-06-08 17:36:44,602 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433291. MinCovDet requires more samples than features.
2026-06-08 17:36:44,603 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433292. MinCovDet requires more samples than features.
2026-06-08 17:36:44,603 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433293. MinCovDet requires more samples than features.
2026-06-08 17:36:44,604 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433294. MinCovDet requires more samples than features.
2026-06-08 17:36:44,604 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433295. MinCovDet requires more samples than features.
2026-06-08 17:36:44,695 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (2) for probe 433317. MinCovDet requires more samples than features.
2026-06-08 17:36:44,695 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (2) for probe 433318. MinCovDet requires more samples than features.
2026-06-08 17:36:44,695 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433322. MinCovDet requires more samples than features.
2026-06-08 17:36:44,696 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433323. MinCovDet requires more samples than features.
2026-06-08 17:36:44,696 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433324. MinCovDet requires more samples than features.
2026-06-08 17:36:44,774 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433334. MinCovDet requires more samples than features.
2026-06-08 17:36:44,774 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433335. MinCovDet requires more samples than features.
2026-06-08 17:36:44,774 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433336. MinCovDet requires more samples than features.
2026-06-08 17:36:44,775 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433340. MinCovDet requires more samples than features.
2026-06-08 17:36:44,775 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433341. MinCovDet requires more samples than features.
2026-06-08 17:36:44,775 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433342. MinCovDet requires more samples than features.
2026-06-08 17:36:44,776 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433343. MinCovDet requires more samples than features.
2026-06-08 17:36:44,776 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433344. MinCovDet requires more samples than features.
2026-06-08 17:36:44,777 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433345. MinCovDet requires more samples than features.
2026-06-08 17:36:44,777 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433349. MinCovDet requires more samples than features.
2026-06-08 17:36:44,777 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433350. MinCovDet requires more samples than features.
2026-06-08 17:36:44,778 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433351. MinCovDet requires more samples than features.
2026-06-08 17:36:44,778 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433352. MinCovDet requires more samples than features.
2026-06-08 17:36:45,804 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433521. MinCovDet requires more samples than features.
2026-06-08 17:36:45,805 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433522. MinCovDet requires more samples than features.
2026-06-08 17:36:45,805 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433523. MinCovDet requires more samples than features.
2026-06-08 17:36:45,805 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433524. MinCovDet requires more samples than features.
2026-06-08 17:36:45,806 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433525. MinCovDet requires more samples than features.
2026-06-08 17:36:45,806 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433526. MinCovDet requires more samples than features.
2026-06-08 17:36:45,807 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433527. MinCovDet requires more samples than features.
2026-06-08 17:36:45,807 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433528. MinCovDet requires more samples than features.
2026-06-08 17:36:45,807 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433529. MinCovDet requires more samples than features.
2026-06-08 17:36:45,808 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433538. MinCovDet requires more samples than features.
2026-06-08 17:36:45,808 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433539. MinCovDet requires more samples than features.
2026-06-08 17:36:45,808 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433540. MinCovDet requires more samples than features.
2026-06-08 17:36:45,809 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433541. MinCovDet requires more samples than features.
2026-06-08 17:36:45,809 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433542. MinCovDet requires more samples than features.
2026-06-08 17:36:45,809 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433543. MinCovDet requires more samples than features.
2026-06-08 17:36:45,810 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433544. MinCovDet requires more samples than features.
2026-06-08 17:36:45,810 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433545. MinCovDet requires more samples than features.
2026-06-08 17:36:45,810 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433546. MinCovDet requires more samples than features.
2026-06-08 17:36:45,811 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433547. MinCovDet requires more samples than features.
2026-06-08 17:36:45,811 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433548. MinCovDet requires more samples than features.
2026-06-08 17:36:45,811 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433549. MinCovDet requires more samples than features.
2026-06-08 17:36:45,812 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433552. MinCovDet requires more samples than features.
2026-06-08 17:36:45,812 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433553. MinCovDet requires more samples than features.
2026-06-08 17:36:45,812 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433554. MinCovDet requires more samples than features.
2026-06-08 17:36:45,813 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (2) for probe 433565. MinCovDet requires more samples than features.
2026-06-08 17:36:45,813 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (2) for probe 433566. MinCovDet requires more samples than features.
2026-06-08 17:36:45,813 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (1) compared to nearby probes (3) for probe 433569. MinCovDet requires more samples than features.
2026-06-08 17:36:45,814 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (1) compared to nearby probes (3) for probe 433570. MinCovDet requires more samples than features.
2026-06-08 17:36:45,814 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (1) compared to nearby probes (3) for probe 433571. MinCovDet requires more samples than features.
2026-06-08 17:36:45,814 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433572. MinCovDet requires more samples than features.
2026-06-08 17:36:45,815 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (2) for probe 433573. MinCovDet requires more samples than features.
2026-06-08 17:36:45,815 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (2) for probe 433574. MinCovDet requires more samples than features.
2026-06-08 17:36:45,815 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433578. MinCovDet requires more samples than features.
2026-06-08 17:36:45,816 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433579. MinCovDet requires more samples than features.
2026-06-08 17:36:45,816 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433580. MinCovDet requires more samples than features.
2026-06-08 17:36:45,816 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433581. MinCovDet requires more samples than features.
2026-06-08 17:36:45,817 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433582. MinCovDet requires more samples than features.
2026-06-08 17:36:45,817 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433583. MinCovDet requires more samples than features.
2026-06-08 17:36:45,817 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (2) for probe 433584. MinCovDet requires more samples than features.
2026-06-08 17:36:45,818 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (2) for probe 433585. MinCovDet requires more samples than features.
2026-06-08 17:36:45,818 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (2) for probe 433586. MinCovDet requires more samples than features.
2026-06-08 17:36:45,818 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (2) for probe 433587. MinCovDet requires more samples than features.
2026-06-08 17:36:45,853 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433610. MinCovDet requires more samples than features.
2026-06-08 17:36:45,854 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433611. MinCovDet requires more samples than features.
2026-06-08 17:36:45,854 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433612. MinCovDet requires more samples than features.
2026-06-08 17:36:45,854 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433613. MinCovDet requires more samples than features.
2026-06-08 17:36:45,855 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433614. MinCovDet requires more samples than features.
2026-06-08 17:36:45,855 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433615. MinCovDet requires more samples than features.
2026-06-08 17:36:45,855 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433616. MinCovDet requires more samples than features.
2026-06-08 17:36:45,864 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433618. MinCovDet requires more samples than features.
2026-06-08 17:36:45,865 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433619. MinCovDet requires more samples than features.
2026-06-08 17:36:45,882 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433622. MinCovDet requires more samples than features.
2026-06-08 17:36:45,883 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433623. MinCovDet requires more samples than features.
2026-06-08 17:36:45,883 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433624. MinCovDet requires more samples than features.
2026-06-08 17:36:45,892 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433626. MinCovDet requires more samples than features.
2026-06-08 17:36:45,892 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433627. MinCovDet requires more samples than features.
2026-06-08 17:36:45,927 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433632. MinCovDet requires more samples than features.
2026-06-08 17:36:45,927 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433633. MinCovDet requires more samples than features.
2026-06-08 17:36:45,928 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433634. MinCovDet requires more samples than features.
2026-06-08 17:36:45,928 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433635. MinCovDet requires more samples than features.
2026-06-08 17:36:45,929 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433636. MinCovDet requires more samples than features.
2026-06-08 17:36:45,929 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433639. MinCovDet requires more samples than features.
2026-06-08 17:36:45,929 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433640. MinCovDet requires more samples than features.
2026-06-08 17:36:45,930 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (1) compared to nearby probes (3) for probe 433641. MinCovDet requires more samples than features.
2026-06-08 17:36:45,930 - cnv_pipe.cnv_pipe.batch.ess - WARNING - No valid samples remain for probe 433642 after NaN filtering. Assigning default weight of 1.0.
2026-06-08 17:36:45,930 - cnv_pipe.cnv_pipe.batch.ess - WARNING - No valid samples remain for probe 433643 after NaN filtering. Assigning default weight of 1.0.
2026-06-08 17:36:45,930 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433644. MinCovDet requires more samples than features.
2026-06-08 17:36:45,930 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433645. MinCovDet requires more samples than features.
2026-06-08 17:36:45,931 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433646. MinCovDet requires more samples than features.
2026-06-08 17:36:45,931 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (1) compared to nearby probes (3) for probe 433647. MinCovDet requires more samples than features.
2026-06-08 17:36:45,931 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (1) compared to nearby probes (3) for probe 433648. MinCovDet requires more samples than features.
2026-06-08 17:36:45,932 - cnv_pipe.cnv_pipe.batch.ess - WARNING - No valid samples remain for probe 433649 after NaN filtering. Assigning default weight of 1.0.
2026-06-08 17:36:45,932 - cnv_pipe.cnv_pipe.batch.ess - WARNING - No valid samples remain for probe 433650 after NaN filtering. Assigning default weight of 1.0.
2026-06-08 17:36:45,932 - cnv_pipe.cnv_pipe.batch.ess - WARNING - No valid samples remain for probe 433651 after NaN filtering. Assigning default weight of 1.0.
2026-06-08 17:36:45,932 - cnv_pipe.cnv_pipe.batch.ess - WARNING - No valid samples remain for probe 433652 after NaN filtering. Assigning default weight of 1.0.
2026-06-08 17:36:45,932 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433653. MinCovDet requires more samples than features.
2026-06-08 17:36:45,932 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433654. MinCovDet requires more samples than features.
2026-06-08 17:36:45,933 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433655. MinCovDet requires more samples than features.
2026-06-08 17:36:45,933 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433656. MinCovDet requires more samples than features.
2026-06-08 17:36:45,933 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (3) for probe 433657. MinCovDet requires more samples than features.
2026-06-08 17:36:45,934 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (2) for probe 433658. MinCovDet requires more samples than features.
2026-06-08 17:36:45,934 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (2) compared to nearby probes (2) for probe 433659. MinCovDet requires more samples than features.
2026-06-08 17:36:46,016 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433718. MinCovDet requires more samples than features.
2026-06-08 17:36:46,016 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433719. MinCovDet requires more samples than features.
2026-06-08 17:36:47,166 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433871. MinCovDet requires more samples than features.
2026-06-08 17:36:47,366 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433896. MinCovDet requires more samples than features.
2026-06-08 17:36:47,367 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433897. MinCovDet requires more samples than features.
2026-06-08 17:36:47,367 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433898. MinCovDet requires more samples than features.
2026-06-08 17:36:47,444 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433908. MinCovDet requires more samples than features.
2026-06-08 17:36:47,445 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433909. MinCovDet requires more samples than features.
2026-06-08 17:36:47,445 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 433910. MinCovDet requires more samples than features.
2026-06-08 17:36:48,536 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434050. MinCovDet requires more samples than features.
2026-06-08 17:36:48,536 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434051. MinCovDet requires more samples than features.
2026-06-08 17:36:48,537 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434052. MinCovDet requires more samples than features.
2026-06-08 17:36:48,537 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434053. MinCovDet requires more samples than features.
2026-06-08 17:36:48,564 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434057. MinCovDet requires more samples than features.
2026-06-08 17:36:48,565 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434058. MinCovDet requires more samples than features.
2026-06-08 17:36:48,565 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434059. MinCovDet requires more samples than features.
2026-06-08 17:36:49,343 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434160. MinCovDet requires more samples than features.
2026-06-08 17:36:49,343 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434161. MinCovDet requires more samples than features.
2026-06-08 17:36:49,569 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434189. MinCovDet requires more samples than features.
2026-06-08 17:36:49,569 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434190. MinCovDet requires more samples than features.
2026-06-08 17:36:49,579 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434192. MinCovDet requires more samples than features.
2026-06-08 17:36:49,580 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434193. MinCovDet requires more samples than features.
2026-06-08 17:36:49,580 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434194. MinCovDet requires more samples than features.
2026-06-08 17:36:49,597 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434197. MinCovDet requires more samples than features.
2026-06-08 17:36:49,597 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434198. MinCovDet requires more samples than features.
2026-06-08 17:36:49,597 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434199. MinCovDet requires more samples than features.
2026-06-08 17:36:49,598 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434200. MinCovDet requires more samples than features.
2026-06-08 17:36:49,598 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434201. MinCovDet requires more samples than features.
2026-06-08 17:36:49,598 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434202. MinCovDet requires more samples than features.
2026-06-08 17:36:49,599 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434203. MinCovDet requires more samples than features.
2026-06-08 17:36:49,599 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434204. MinCovDet requires more samples than features.
2026-06-08 17:36:49,600 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434205. MinCovDet requires more samples than features.
2026-06-08 17:36:49,757 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434226. MinCovDet requires more samples than features.
2026-06-08 17:36:49,757 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434227. MinCovDet requires more samples than features.
2026-06-08 17:36:49,758 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434228. MinCovDet requires more samples than features.
2026-06-08 17:36:49,758 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434229. MinCovDet requires more samples than features.
2026-06-08 17:36:49,759 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434230. MinCovDet requires more samples than features.
2026-06-08 17:36:49,759 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434231. MinCovDet requires more samples than features.
2026-06-08 17:36:49,827 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434240. MinCovDet requires more samples than features.
2026-06-08 17:36:49,827 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434241. MinCovDet requires more samples than features.
2026-06-08 17:36:49,827 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434242. MinCovDet requires more samples than features.
2026-06-08 17:36:49,894 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434251. MinCovDet requires more samples than features.
2026-06-08 17:36:49,895 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434252. MinCovDet requires more samples than features.
2026-06-08 17:36:49,895 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434253. MinCovDet requires more samples than features.
2026-06-08 17:36:49,904 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434255. MinCovDet requires more samples than features.
2026-06-08 17:36:49,904 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434256. MinCovDet requires more samples than features.
2026-06-08 17:36:49,905 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434257. MinCovDet requires more samples than features.
2026-06-08 17:36:49,905 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434258. MinCovDet requires more samples than features.
2026-06-08 17:36:49,905 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434259. MinCovDet requires more samples than features.
2026-06-08 17:36:49,984 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434270. MinCovDet requires more samples than features.
2026-06-08 17:36:49,984 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434271. MinCovDet requires more samples than features.
2026-06-08 17:36:49,984 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434272. MinCovDet requires more samples than features.
2026-06-08 17:36:49,985 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434273. MinCovDet requires more samples than features.
2026-06-08 17:36:49,985 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434274. MinCovDet requires more samples than features.
2026-06-08 17:36:49,985 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434275. MinCovDet requires more samples than features.
2026-06-08 17:36:49,986 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434276. MinCovDet requires more samples than features.
2026-06-08 17:36:49,986 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434277. MinCovDet requires more samples than features.
2026-06-08 17:36:50,744 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434372. MinCovDet requires more samples than features.
2026-06-08 17:36:50,744 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434373. MinCovDet requires more samples than features.
2026-06-08 17:36:51,611 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434481. MinCovDet requires more samples than features.
2026-06-08 17:36:51,612 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434482. MinCovDet requires more samples than features.
2026-06-08 17:36:51,612 - cnv_pipe.cnv_pipe.batch.ess - WARNING - Not enough samples (3) compared to nearby probes (3) for probe 434483. MinCovDet requires more samples than features.
2026-06-08 17:36:52,524 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Effective sample size obtained
2026-06-08 17:36:52,525 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Get ploidy, all chromosomes
/opt/venv/lib/python3.12/site-packages/sklearn/covariance/_robust_covariance.py:793: UserWarning: The covariance matrix associated to your dataset is not full rank
/opt/venv/lib/python3.12/site-packages/sklearn/base.py:1336: ConvergenceWarning: Number of distinct clusters (1) found smaller than n_clusters (2). Possibly due to duplicate points in X.
/opt/venv/lib/python3.12/site-packages/numpy/lib/_nanfunctions_impl.py:1213: RuntimeWarning: Mean of empty slice
/opt/venv/lib/python3.12/site-packages/cnv_pipe/sca/pipeline.py:302: RuntimeWarning: Mean of empty slice
/opt/venv/lib/python3.12/site-packages/cnv_pipe/sca/pipeline.py:303: RuntimeWarning: Mean of empty slice
/opt/venv/lib/python3.12/site-packages/cnv_pipe/sca/pipeline.py:415: RuntimeWarning: Mean of empty slice
/opt/venv/lib/python3.12/site-packages/plotnine/ggplot.py:623: PlotnineWarning: Saving 6 x 5 in image.
/opt/venv/lib/python3.12/site-packages/plotnine/ggplot.py:624: PlotnineWarning: Filename: <_io.BufferedWriter name='REGRESSION_1__sex_calls.png'>
2026-06-08 17:37:00,647 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Ploidy obtained
2026-06-08 17:37:00,647 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Get sample medians adjusting for ploidy and effective sample size
2026-06-08 17:37:00,661 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Sample medians obtained
2026-06-08 17:37:00,662 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Use ploidy information to get the proper masks for chrX and chrY
2026-06-08 17:37:00,662 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - 
2026-06-08 17:37:00,664 - cnv_pipe.cnv_pipe.batch.mask - INFO - Iteration 0, outliers: 0
2026-06-08 17:37:00,670 - cnv_pipe.cnv_pipe.batch.mask - INFO - Iteration 1, outliers: 0
2026-06-08 17:37:00,679 - cnv_pipe.cnv_pipe.batch.mask - INFO - Iteration 0, outliers: 0
2026-06-08 17:37:00,679 - cnv_pipe.cnv_pipe.batch.mask - INFO - Iteration 1, outliers: 0
2026-06-08 17:37:00,680 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Masks for chrX and chrY obtained
2026-06-08 17:37:00,680 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Get effective sample size for chrX and chrY
2026-06-08 17:37:01,269 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Effective sample size for chrX and chrY obtained
2026-06-08 17:37:01,269 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Get the final double norm values, adjusting for ploidies
/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/preprocess.py:249: RuntimeWarning: invalid value encountered in divide
/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/preprocess.py:249: RuntimeWarning: invalid value encountered in divide
/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/preprocess.py:249: RuntimeWarning: invalid value encountered in divide
/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/preprocess.py:249: RuntimeWarning: invalid value encountered in divide
/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/preprocess.py:249: RuntimeWarning: invalid value encountered in divide
/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/preprocess.py:249: RuntimeWarning: invalid value encountered in divide
/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/preprocess.py:249: RuntimeWarning: invalid value encountered in divide
/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/preprocess.py:249: RuntimeWarning: invalid value encountered in divide
/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/preprocess.py:249: RuntimeWarning: invalid value encountered in divide
/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/preprocess.py:249: RuntimeWarning: invalid value encountered in divide
/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/preprocess.py:249: RuntimeWarning: invalid value encountered in divide
/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/preprocess.py:249: RuntimeWarning: invalid value encountered in divide
/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/preprocess.py:249: RuntimeWarning: divide by zero encountered in divide
/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/preprocess.py:249: RuntimeWarning: invalid value encountered in divide
/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/preprocess.py:249: RuntimeWarning: invalid value encountered in divide
/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/preprocess.py:249: RuntimeWarning: invalid value encountered in divide
/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/preprocess.py:249: RuntimeWarning: invalid value encountered in divide
/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/preprocess.py:249: RuntimeWarning: invalid value encountered in divide
/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/preprocess.py:249: RuntimeWarning: invalid value encountered in divide
/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/preprocess.py:249: RuntimeWarning: invalid value encountered in divide
/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/preprocess.py:249: RuntimeWarning: invalid value encountered in divide
/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/preprocess.py:249: RuntimeWarning: divide by zero encountered in divide
/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/preprocess.py:249: RuntimeWarning: invalid value encountered in divide
/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/preprocess.py:249: RuntimeWarning: invalid value encountered in divide
/opt/venv/lib/python3.12/site-packages/cnv_pipe/batch/preprocess.py:249: RuntimeWarning: invalid value encountered in divide
/opt/venv/lib/python3.12/site-packages/numpy/lib/_nanfunctions_impl.py:1213: RuntimeWarning: Mean of empty slice
2026-06-08 17:37:01,421 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Double norm values obtained
2026-06-08 17:37:01,421 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Format and write the data for sample-probe combinations
2026-06-08 17:37:02,238 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Sample-probe data written
2026-06-08 17:37:02,238 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Sample-level metrics. Calculating, formatting, and saving
2026-06-08 17:37:02,272 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Sample-level metrics written
2026-06-08 17:37:02,272 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Save ploidy estimates
2026-06-08 17:37:02,276 - cnv_pipe.cnv_pipe.batch.preprocess - INFO - Batch pre-processing complete