[2026-06-08T17:36:22.697190Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T17:36:22.698010Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T17:36:22.698022Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T17:36:22.698027Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T17:36:22.698031Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXgPDbbj'
[2026-06-08T17:36:22.698035Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T17:36:22.698040Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T17:36:22.698044Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T17:36:22.698048Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-08T17:36:22.698051Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T17:36:22.698055Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T17:36:22.698059Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T17:36:22.698062Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T17:36:22.698066Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T17:36:22.698372Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T17:36:22.698478Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T17:36:22.704274Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T17:36:22.704980Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T17:36:22.705218Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T17:36:22.705549Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T17:36:22.705842Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.706271Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.706380Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.706459Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.706623Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.706694Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.706820Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.706886Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.707163Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.707454Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.707660Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.707833Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.707920Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.708230Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.708509Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.709232Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.711400Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.711726Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.711883Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T17:36:22.712143Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.712584Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.712661Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.712776Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.712843Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.712956Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.713019Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.713135Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.713200Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.713312Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.713384Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.713790Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.714619Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.714795Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.714859Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.714972Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.715036Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.715146Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.715212Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.715321Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.715389Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.715500Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.715560Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.715670Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.715738Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.716580Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.716919Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.717036Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.717099Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.717269Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.717337Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.717445Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.717507Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.717663Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.717724Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.717833Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.717894Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.718178Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.718574Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.718688Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.718753Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.718863Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.718924Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.719040Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.719104Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.719215Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.719283Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.719396Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.719461Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.735528Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.735643Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.735713Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.735870Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.735938Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.736025Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.737308Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.737625Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.738963Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.739118Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:22.740333Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T17:36:22.740446Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.741020Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.741716Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.742452Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.743514Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.744630Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.745813Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.746987Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.749958Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-08T17:36:22.752596Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-08T17:36:22.757892Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-08T17:36:22.760424Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T17:36:22.763794Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-08T17:36:22.767193Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-08T17:36:22.848157Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-08T17:36:22.881085Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.881916Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.885780Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-08T17:36:23.250280Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T17:36:23.297581Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.298519Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.301400Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T17:36:23.362742Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.363620Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.366523Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-08T17:36:23.428344Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.429187Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.432397Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T17:36:24.396207Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.396994Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.399944Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T17:36:24.511273Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.512104Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.514988Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-08T17:36:24.626452Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.627268Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.630429Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T17:36:24.659404Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.659499Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.660227Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.660641Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.664068Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-08T17:36:24.665202Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T17:36:24.825689Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.827147Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.827442Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.829479Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.830722Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-08T17:36:24.831989Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-08T17:36:24.861400Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.861492Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.862211Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.862503Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.865671Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T17:36:25.077719Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.078570Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.081307Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-08T17:36:25.142954Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.143805Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.146886Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-08T17:36:25.408931Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.409705Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.412537Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T17:36:25.474241Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.475340Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.478466Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-08T17:36:25.483705Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.483771Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.484347Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.484919Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.487447Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-08T17:36:25.488158Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T17:36:25.517014Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.517094Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.517739Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.518020Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.520521Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-08T17:36:25.521773Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.522496Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.522899Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-08T17:36:25.525280Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T17:36:25.554401Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.554503Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.555108Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.555426Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.558300Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T17:36:25.559473Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-08T17:36:25.587772Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.587847Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.588431Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.588715Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.592009Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-08T17:36:25.593256Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T17:36:25.653382Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.654147Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.656883Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T17:36:25.686137Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.686807Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.689395Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-08T17:36:25.731249Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T17:36:25.751293Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.751396Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.752016Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.752298Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.755693Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T17:36:25.756011Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T17:36:25.784305Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.785315Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.785631Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.787810Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.788464Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T17:36:25.790860Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-08T17:36:25.820007Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.820953Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.821207Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.822310Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.824920Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-08T17:36:25.826368Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T17:36:25.855570Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.856119Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:25.858570Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-08T17:36:26.121313Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.121956Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.124780Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-08T17:36:26.154019Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.154629Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.157360Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T17:36:26.369120Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.369754Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.372668Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T17:36:26.434101Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.434692Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.437553Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-08T17:36:26.549302Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.549912Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.552600Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-08T17:36:26.581809Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.582402Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.585018Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-08T17:36:26.646682Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.647220Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.649904Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T17:36:26.679460Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.680014Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.682493Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-08T17:36:26.894269Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.894852Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.897650Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T17:36:26.927093Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.927627Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.930493Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-08T17:36:27.142148Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.142712Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.145368Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-08T17:36:27.174897Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.175392Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.177889Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-08T17:36:27.207429Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.207924Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.210542Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-08T17:36:27.322181Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.322686Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.325380Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-08T17:36:27.330383Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.330754Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.333261Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-08T17:36:27.362832Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.362922Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.363357Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.363600Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.366242Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T17:36:27.367276Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T17:36:27.396441Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.428492Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.428910Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.431415Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T17:36:27.460836Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.575017Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.575456Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.578258Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T17:36:27.607373Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.639314Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.639723Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.642464Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-08T17:36:27.671786Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.886391Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.886787Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.889386Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-08T17:36:27.918849Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.918921Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.919286Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.921865Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-08T17:36:27.951308Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.867150Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.867219Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.867569Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.867891Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.870740Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-08T17:36:28.897166Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-08T17:36:28.900015Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.900080Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.900279Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.900405Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.900835Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.901189Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.905706Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T17:36:28.906002Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T17:36:28.906647Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T17:36:28.934187Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.934253Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.934275Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.934461Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.934906Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.937413Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T17:36:28.938084Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T17:36:28.967399Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.967470Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.967645Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.970172Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T17:36:28.999679Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.324151Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T17:36:41.586015Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T17:36:41.586015Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] 
[2026-06-08T17:36:41.586015Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T17:36:41.586074Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] 
[2026-06-08T17:36:41.586081Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T17:36:41.586088Z] [nf-51130a538b02f1b4a6400678a3a2b174-90309-jp5fk] [577_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec