Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/1f8d437761990ed890e1456d2296f8/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/fae45ed026bca261181ed622cc13b0/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/631162695b9bd0a88f764a0ca9ed56/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/631162695b9bd0a88f764a0ca9ed56/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-kl8ar6f_ because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 17:45:31,140 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 17:45:32,047 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 17:45:32,222 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 17:45:33,329 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 17:45:33,404 - cnv_pipe.batch.run_model - INFO - Processing cluster 2636 with 195 probes
2026-06-08 17:45:33,795 - cnv_pipe.batch.run_model.cluster2636 - INFO - Child process started for cluster 2636 with 195 probes
2026-06-08 17:46:34,357 - cnv_pipe.batch.run_model.cluster2636 - INFO - Child process finished cluster 2636. Wrote cluster_2636_samples.csv and cluster_2636_params.csv
2026-06-08 17:46:34,358 - cnv_pipe.batch.run_model - INFO - Cluster 2636 finished in 60.95 seconds. Status: SUCCESS