.command.err - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr4_22420786-22421189.bed)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/b6ee742f6e49ad0b8c3d002beafe66/.command.err
Size: 85.8 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr4_22420786-22421189.bed)
Attempt
Content

[2026-06-08T17:36:27.401011Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T17:36:27.408519Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T17:36:27.408536Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T17:36:27.408540Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T17:36:27.408545Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXmzgOVE'
[2026-06-08T17:36:27.408549Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T17:36:27.408554Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T17:36:27.408557Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T17:36:27.408561Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-08T17:36:27.408564Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T17:36:27.408568Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T17:36:27.408572Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T17:36:27.408576Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T17:36:27.408580Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T17:36:27.409486Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T17:36:27.409580Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T17:36:27.415567Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T17:36:27.416385Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T17:36:27.416600Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T17:36:27.416846Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T17:36:27.417100Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.417621Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.417711Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.417782Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.417898Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.417963Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.418082Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.418146Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.418731Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.418834Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.419223Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.420008Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.420285Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.420580Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.422609Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.423216Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T17:36:27.423411Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.423533Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.423664Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.423743Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.423999Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.424290Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.424587Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.424658Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.424774Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.424838Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.424961Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.425029Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.425144Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.425213Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.425328Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.425394Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.425503Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.425749Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.426221Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.426616Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.427180Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.427256Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.427386Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.427450Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.427587Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.427657Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.427781Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.427847Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.427959Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.428034Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.428628Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.429208Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.429453Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.429620Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.429816Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.429901Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.430396Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.430824Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.431003Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.431105Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.431318Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.431425Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.431601Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.431715Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.432201Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.432665Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.432833Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.432951Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.433129Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.433247Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.433447Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.433556Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.434110Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.434630Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.434854Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.434987Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.435117Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.435239Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.437153Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.437831Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.438010Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.438090Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.438208Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.438276Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.438392Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.438456Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.438570Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.438632Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.439133Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.439642Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.439767Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.439841Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.439961Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.440027Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.440146Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.440213Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.440323Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.440388Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.440502Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.440572Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.457785Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.458103Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.458284Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.458414Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.459394Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.459598Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.460114Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.460401Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.460916Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.461835Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.462262Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.462649Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.463329Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.466334Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.469240Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-08T17:36:27.469426Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.470112Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.470423Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-08T17:36:27.471118Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.471399Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:27.471839Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T17:36:27.477108Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-08T17:36:27.480205Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-08T17:36:27.486479Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-08T17:36:27.488440Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-08T17:36:27.489493Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-08T17:36:27.704272Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.705261Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:27.708793Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-08T17:36:28.172711Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-08T17:36:28.221278Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.222317Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.226493Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-08T17:36:28.388464Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.389688Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.394320Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-08T17:36:28.554694Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.555782Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.559543Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-08T17:36:28.620938Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.622094Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.626185Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-08T17:36:28.639037Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.640023Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:28.644230Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-08T17:36:29.006460Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.007564Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.012050Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-08T17:36:29.072913Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.074024Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.077778Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-08T17:36:29.439865Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.440932Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.444560Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-08T17:36:29.555942Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.557022Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.561232Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-08T17:36:29.622124Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.623267Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.627726Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T17:36:29.628269Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.629233Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.633161Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-08T17:36:29.694622Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.694728Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.695703Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.696635Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.701290Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-08T17:36:29.702580Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-08T17:36:29.729941Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.731155Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.734810Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-08T17:36:29.739286Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.740094Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.743220Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-08T17:36:29.804605Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.805257Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.806467Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.807039Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.810614Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-08T17:36:29.811841Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-08T17:36:29.871687Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.872869Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.876497Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-08T17:36:29.889341Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.890465Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.893833Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-08T17:36:29.955195Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.956427Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:29.959985Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T17:36:30.021197Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.022356Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.026529Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-08T17:36:30.488548Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.489551Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.493543Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-08T17:36:30.604644Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.604747Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.605879Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.606235Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.610815Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-08T17:36:30.821580Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.824166Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.828187Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-08T17:36:30.889261Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.890476Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.894252Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-08T17:36:30.955508Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.956843Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:30.960694Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-08T17:36:31.071878Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.073005Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.076787Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-08T17:36:31.138084Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.139257Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.143725Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-08T17:36:31.304657Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.304769Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.304800Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.305857Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.306287Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.306727Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.310887Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T17:36:31.313863Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-08T17:36:31.314489Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-08T17:36:31.374222Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.375327Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.379522Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-08T17:36:31.891987Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.893109Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.897395Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-08T17:36:31.957772Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.958667Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:31.962338Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-08T17:36:32.023337Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.023434Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.024283Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.024692Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.028194Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-08T17:36:32.029594Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-08T17:36:32.089470Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.089567Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.090339Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.090650Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.094059Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-08T17:36:32.095281Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-08T17:36:32.155622Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.156440Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.159921Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-08T17:36:32.271364Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.272352Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.275771Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-08T17:36:32.336849Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.337636Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-08T17:36:32.338328Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.338758Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.338843Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.341264Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.341829Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-08T17:36:32.342066Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.344214Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-08T17:36:32.346505Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-08T17:36:32.375813Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.375910Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.376993Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.377326Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.377654Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.380813Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-08T17:36:32.381754Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.384482Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-08T17:36:32.414336Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-08T17:36:32.446061Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.446153Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.446182Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.446839Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.447299Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.447950Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.451961Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-08T17:36:32.453174Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-08T17:36:32.454795Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-08T17:36:32.512832Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.513536Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.517272Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-08T17:36:32.577802Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.578608Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.581868Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-08T17:36:32.643044Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.643829Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.647012Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-08T17:36:32.708114Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.708950Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.712192Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-08T17:36:32.725611Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.726310Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.729360Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-08T17:36:32.758394Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.759190Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.762513Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-08T17:36:32.763197Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.763744Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.767202Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-08T17:36:32.878111Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.879712Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.880216Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.882882Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.885256Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-08T17:36:32.886411Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-08T17:36:32.948363Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.948478Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.949229Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.949592Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:32.953782Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-08T17:36:32.997684Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-08T17:36:33.014588Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.015393Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.019224Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-08T17:36:33.080112Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.080970Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.084773Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-08T17:36:33.146363Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.147142Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.150813Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-08T17:36:33.211882Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.212637Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.216345Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-08T17:36:33.377802Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.378583Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.382031Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-08T17:36:33.443059Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.443839Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.447669Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-08T17:36:33.508198Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.508938Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.513103Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-08T17:36:33.874796Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.875576Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:33.879732Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-08T17:36:34.040936Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.041801Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.045575Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-08T17:36:34.058220Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.058855Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.062519Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-08T17:36:34.075031Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.075668Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.079370Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-08T17:36:34.108159Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.108836Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.112899Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-08T17:36:34.173614Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.174313Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.177684Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-08T17:36:34.178461Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.178914Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.182322Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-08T17:36:34.211198Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.211781Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.214531Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-08T17:36:34.215432Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.215886Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.218567Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-08T17:36:34.247993Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.248533Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.251235Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-08T17:36:34.264313Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.264842Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.267538Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-08T17:36:34.328923Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.543435Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.544001Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.547325Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-08T17:36:34.608083Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.608166Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.608642Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.611523Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-08T17:36:34.672741Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.837276Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.837765Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.840770Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-08T17:36:34.902050Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.966092Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.966533Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:34.969334Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-08T17:36:35.030661Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.194990Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.195435Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.198771Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-08T17:36:35.227367Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.227868Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.230744Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-08T17:36:35.231597Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.263496Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.279355Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.279839Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.283131Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-08T17:36:35.312209Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.312501Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.312630Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.313160Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.313575Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.317500Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T17:36:35.318872Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T17:36:35.320049Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T17:36:35.345765Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.345837Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.346032Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.346872Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.347405Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.350115Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T17:36:35.351096Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T17:36:35.380750Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.380823Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.381000Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:35.383561Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T17:36:35.412899Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:38.033551Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T17:36:46.297738Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T17:36:46.297738Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] 
[2026-06-08T17:36:46.297738Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T17:36:46.297817Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] 
[2026-06-08T17:36:46.297826Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T17:36:46.297834Z] [nf-6ab6ee742f6e49ad0b8c3d002beafe66-195be-r77bn] [606_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec