File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/621a984a5e36783c69b2e871c9c610/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-06-08T17:36:20.876680Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T17:36:20.877272Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T17:36:20.877284Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T17:36:20.877289Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T17:36:20.877293Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXZX0gRY'
[2026-06-08T17:36:20.877296Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T17:36:20.877301Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T17:36:20.877304Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T17:36:20.877308Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-08T17:36:20.877312Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T17:36:20.877316Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T17:36:20.877319Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T17:36:20.877323Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T17:36:20.877329Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T17:36:20.878076Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T17:36:20.878198Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T17:36:20.883950Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T17:36:20.884709Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T17:36:20.885012Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T17:36:20.885177Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T17:36:20.885335Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.886153Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.886255Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.886332Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.886448Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.886515Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.886651Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.886839Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.887069Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.887387Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.887558Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.887695Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.887779Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.888106Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.888381Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.888868Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.889028Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.891029Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T17:36:20.891199Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.891486Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.891882Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.892121Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.892237Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.892305Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.892417Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.892480Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.892888Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.892953Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.893063Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.893339Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.893603Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.893718Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.893872Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.893938Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.894078Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.894146Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.894262Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.894352Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.894474Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.894539Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.894686Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.894837Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.895336Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.895700Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.895810Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.895874Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.895987Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.896111Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.896224Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.896290Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.896396Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.896460Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.896566Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.896627Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.896847Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.897235Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.897347Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.897413Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.897519Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.897581Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.897693Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.897753Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.897863Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.897930Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.912343Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.912706Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.913264Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.913423Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.913496Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.913591Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.913779Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.913996Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.914164Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T17:36:20.914216Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T17:36:20.914450Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.915175Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.916876Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.917621Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.918439Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.921120Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.921524Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-08T17:36:20.922155Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.923916Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.924992Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.928253Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-08T17:36:20.932271Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-08T17:36:20.937168Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-08T17:36:20.938129Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-08T17:36:20.941504Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-08T17:36:20.943996Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-08T17:36:20.994183Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.994279Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.994975Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.997526Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:20.998543Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-08T17:36:21.001704Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-08T17:36:21.030512Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.031271Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.034276Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-08T17:36:21.047165Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.047930Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.051276Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-08T17:36:21.212459Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.213294Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.216469Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-08T17:36:21.478284Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.479109Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.482114Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-08T17:36:21.511115Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.511896Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.514747Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-08T17:36:21.576010Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.576833Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.579974Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-08T17:36:21.641520Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.642364Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.645178Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-08T17:36:21.674373Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.675134Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.678445Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-08T17:36:21.839871Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.840717Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.843715Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-08T17:36:21.904877Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.905693Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.908526Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-08T17:36:21.937705Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.938530Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:21.941249Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-08T17:36:22.002725Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.002829Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.003487Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.003819Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.007097Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-08T17:36:22.008076Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-08T17:36:22.036353Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.037375Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.040049Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-08T17:36:22.151674Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.152707Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.155812Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-08T17:36:22.184708Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.185580Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.188488Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-08T17:36:22.400258Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-08T17:36:22.400885Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.401113Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.401935Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.402271Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.402501Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.405899Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-08T17:36:22.406723Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-08T17:36:22.406824Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.409241Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-08T17:36:22.414450Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.415006Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.417642Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-08T17:36:22.447120Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.447200Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.447227Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.447809Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.448222Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.448631Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.449421Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.452159Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-08T17:36:22.455269Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-08T17:36:22.455551Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.456495Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-08T17:36:22.459683Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-08T17:36:22.520461Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.521108Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.523958Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-08T17:36:22.585207Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.585314Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.585888Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.586331Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.589276Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-08T17:36:22.590506Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T17:36:22.618459Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.618551Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.619078Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.619334Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.622250Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-08T17:36:22.623860Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-08T17:36:22.651653Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.652238Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.655464Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-08T17:36:22.684581Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.684664Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.685190Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.685477Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.688106Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-08T17:36:22.689116Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-08T17:36:22.718897Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.718975Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.719002Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.719501Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.719738Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.721885Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.722234Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-08T17:36:22.725273Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-08T17:36:22.725757Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-08T17:36:22.754639Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.755199Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.758000Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-08T17:36:22.787364Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.787929Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.790598Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-08T17:36:22.852062Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.852648Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.855372Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T17:36:22.916971Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.917523Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.920287Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T17:36:22.981994Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.982640Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.985507Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-08T17:36:22.998442Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:22.998969Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.001455Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-08T17:36:23.014754Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.015221Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.017781Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-08T17:36:23.031243Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.031763Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.034650Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-08T17:36:23.095933Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.096511Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.099790Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-08T17:36:23.361522Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.362105Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.365306Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-08T17:36:23.426625Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.427164Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.429861Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-08T17:36:23.491278Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.499081Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.499560Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.502138Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-08T17:36:23.515358Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.515860Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.518504Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-08T17:36:23.531666Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.547532Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.611579Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.612063Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.614810Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-08T17:36:23.644016Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.644679Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.645023Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-08T17:36:23.647402Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-08T17:36:23.676887Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.042013Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.042495Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.045026Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-08T17:36:24.074441Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.138711Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.139168Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.141791Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-08T17:36:24.171416Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.171972Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.172247Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.174643Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-08T17:36:24.205599Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.205851Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.206018Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.206353Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.206766Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.210697Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T17:36:24.212193Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T17:36:24.213145Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T17:36:24.240589Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.240675Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.240700Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.240925Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.241150Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.243834Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T17:36:24.244660Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T17:36:24.273516Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.273602Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.273873Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T17:36:24.276309Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T17:36:24.305898Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T17:36:26.576332Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T17:36:31.413489Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T17:36:31.413489Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] 
[2026-06-08T17:36:31.413489Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T17:36:31.413542Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] 
[2026-06-08T17:36:31.413550Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T17:36:31.413556Z] [nf-11621a984a5e36783c69b2e871c9c610-ff76a-w4ftc] [595_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec