cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --read_filter QualCalFilter,table=Sig_18_tissue.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_tissue.table.post --algo ReadWriter Sig_18_tissue.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:164000001, elapsed 0.2s, est remaining 2.9s, peak mem 413MB, user 0.2s, sys 3.9s, output queue size 6
progress 10% @chr2:72000001, elapsed 0.3s, est remaining 2.8s, peak mem 743MB, user 0.5s, sys 8.0s, output queue size 41
progress 15% @chr2:229000001, elapsed 0.5s, est remaining 2.9s, peak mem 947MB, user 1.0s, sys 14.0s, output queue size 14
progress 20% @chr3:148000001, elapsed 0.7s, est remaining 2.9s, peak mem 1067MB, user 1.4s, sys 19.8s, output queue size 8
progress 25% @chr4:140000001, elapsed 0.9s, est remaining 2.8s, peak mem 1265MB, user 1.7s, sys 25.8s, output queue size 13
progress 30% @chr5:108000001, elapsed 1.2s, est remaining 2.7s, peak mem 1412MB, user 2.2s, sys 32.8s, output queue size 24
progress 35% @chr6:53000001, elapsed 1.4s, est remaining 2.6s, peak mem 1508MB, user 2.6s, sys 40.3s, output queue size 23
progress 40% @chr7:72000001, elapsed 1.7s, est remaining 2.5s, peak mem 1568MB, user 3.1s, sys 47.7s, output queue size 14
progress 45% @chr8:78000001, elapsed 1.9s, est remaining 2.4s, peak mem 1703MB, user 3.5s, sys 55.1s, output queue size 29
progress 50% @chr9:62000001, elapsed 2.2s, est remaining 2.2s, peak mem 1775MB, user 4.1s, sys 62.6s, output queue size 35
progress 55% @chr10:114000001, elapsed 2.4s, est remaining 2.0s, peak mem 1868MB, user 4.4s, sys 70.0s, output queue size 26
progress 60% @chr11:116000001, elapsed 2.7s, est remaining 1.8s, peak mem 1937MB, user 4.9s, sys 77.6s, output queue size 24
progress 65% @chr13:7000001, elapsed 3.0s, est remaining 1.6s, peak mem 2000MB, user 5.3s, sys 85.1s, output queue size 19
progress 70% @chr14:74000001, elapsed 3.2s, est remaining 1.4s, peak mem 2060MB, user 5.8s, sys 92.6s, output queue size 27
progress 75% @chr16:27000001, elapsed 3.5s, est remaining 1.2s, peak mem 2114MB, user 6.2s, sys 100.4s, output queue size 13
progress 80% @chr18:12000001, elapsed 3.7s, est remaining 0.9s, peak mem 2162MB, user 6.7s, sys 108.1s, output queue size 13
progress 85% @chr20:14000001, elapsed 4.0s, est remaining 0.7s, peak mem 2231MB, user 7.2s, sys 116.0s, output queue size 10
progress 90% @chrX:45000001, elapsed 4.6s, est remaining 0.5s, peak mem 2750MB, user 11.5s, sys 119.0s, output queue size 114
progress 95% @chrY:39000001, elapsed 4.8s, est remaining 0.3s, peak mem 2780MB, user 16.3s, sys 121.9s, output queue size 276
progress 100% @chr21:41000001, elapsed 8.5s, est remaining 0.0s, peak mem 2786MB, user 33.5s, sys 125.7s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 50047056
output file size: 93248820
reads: 1001838
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.022 real
ReadQualCal::delayed_init: 1 calls 0.004 user 0.001 sys 0.023 real
ReadQualCal::init: 1 calls 0.010 user 0.000 sys 0.006 real
advance: 3219322 calls 1.692 user 16.584 sys 17.619 real
done: 1 calls 0.318 user 1.014 sys 1.336 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.005 user 0.000 sys 8.553 real
fetch: 3219323 calls 0.273 user 16.426 sys 13.996 real
fetch_reads: 3219322 calls 0.500 user 15.766 sys 14.103 real
fetch_ref: 13004 calls 0.077 user 0.040 sys 0.086 real
fetch_vcf: 13004 calls 1.356 user 0.189 sys 1.722 real
idle: 1816 calls 1.524 user 0.281 sys 160.259 real
init: 1 calls 0.007 user 0.001 sys 0.030 real
update: 13229 calls 8.918 user 1.171 sys 10.828 real
write: 3219323 calls 14.614 user 16.341 sys 30.830 real
overall: 2921873408 mem 39.060 user 127.709 sys 10.900 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_tissue.table --after Sig_18_tissue.table.post Sig_18_tissue.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.030 user 0.000 sys 0.029 real
done: 1 calls 0.060 user 0.000 sys 0.060 real
idle: 61 calls 0.002 user 0.000 sys 31.362 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 78798848 mem 0.106 user 0.013 sys 1.053 real